Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30156
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10880| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_6691| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0031)           29   3.5  
SB_22242| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  

>SB_10880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 178

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 145 FCEIKTIIRSVFLGYINE*RHTSVILNWHDV--CVSVAESKQL*HDVTK 5
           F  +++ + S   GY+ + +H SV  NW DV  C++    + + H +TK
Sbjct: 42  FVGLRSHLLSFASGYLTDCQHRSVEENWSDVSNCITDVMDRFIPHKMTK 90


>SB_6691| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0031)
          Length = 753

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 145 FCEIKTIIRSVFLGYINE*RHTSVILNWHDV--CVSVAESKQL*HDVTK 5
           F  +++ + S   GY+ + +H SV  NW DV  C++    + + H +TK
Sbjct: 468 FVGLRSHLLSFASGYLTDCQHRSVEENWSDVSNCITDIMDRFIPHKMTK 516


>SB_22242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 487 TLNDTKKNCKTVAIYIIENFKEACPT 410
           TLN+ +  CKT+A+  +ENF    PT
Sbjct: 514 TLNEVRHMCKTLAMLELENFDPDDPT 539


>SB_52616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1855

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -1

Query: 145  FCEIKTIIRSVFLGYINE*RHTSVILNWHDV--CVSVAESKQL*HDVTK 5
            F  +++ + S   GY+ + +H SV  NW DV  C++    + + H +TK
Sbjct: 1290 FVGLRSHLLSFASGYLADCQHRSVEENWSDVSNCITDVMDRFIPHKMTK 1338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,014,456
Number of Sequences: 59808
Number of extensions: 252176
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)