Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30156
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    25   0.51 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.7  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   6.3  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   6.3  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   6.3  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 214 NLTAKHRKLSNNQTDI*I*LGRIFCEIKTIIR 119
           N+T      SN  T I    GR FCE++ I R
Sbjct: 113 NITLNIESTSNKMTVILTPPGRFFCEVRPIKR 144


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/17 (47%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
 Frame = -1

Query: 88  RHTSVILNWHD-VCVSV 41
           RHTSV++ W   +C+S+
Sbjct: 391 RHTSVLIGWSAFLCISL 407


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 88  RHTSVILNWHDVCVSVAESKQL*HDVT 8
           +HT      HD+C  V  + +  H +T
Sbjct: 53  KHTDACCRTHDMCPDVMSAGESKHGLT 79


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 88  RHTSVILNWHDVCVSVAESKQL*HDVT 8
           +HT      HD+C  V  + +  H +T
Sbjct: 58  KHTDACCRTHDMCPDVMSAGESKHGLT 84


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -1

Query: 88  RHTSVILNWHDVCVSVAESKQL*HDVT 8
           +HT      HD+C  V  + +  H +T
Sbjct: 58  KHTDACCRTHDMCPDVMSAGESKHGLT 84


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,129
Number of Sequences: 438
Number of extensions: 2497
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)