Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30156
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17790.1 68417.m02655 expressed protein                             29   2.2  
At2g30700.1 68415.m03745 expressed protein                             28   5.0  
At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ...    28   6.6  

>At4g17790.1 68417.m02655 expressed protein
          Length = 264

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 126 LFDQCFWDTSMNDVIRQ*FLIGTTFVYLSQNQSSYSMMSL 7
           ++   FW+ +    +   F++G   VYL+  QS YS + L
Sbjct: 26  IYSLSFWEVTAASGVVLGFILGLVCVYLTMPQSDYSFLKL 65


>At2g30700.1 68415.m03745 expressed protein
          Length = 480

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 494 CLRRSTRGDIVDDNVNNYMLACDI 565
           CL RS   D++ DN + Y   CD+
Sbjct: 393 CLLRSYPADLIFDNTSGYSFTCDL 416


>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 477

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 104 SQKH*SNNRFNFAKDSS*LYLNVRLIIG*FSMFSCKIY 217
           S K     R  F  D+S LYL+  LI+G   MF  K+Y
Sbjct: 18  SNKFLCGGRLIFGPDASSLYLSTILILGPAVMFFVKMY 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,419,027
Number of Sequences: 28952
Number of extensions: 173703
Number of successful extensions: 299
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)