Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30155
         (392 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...    68   6e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    41   6e-05
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    41   6e-05
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    30   0.11 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   4.2  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   5.5  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    24   7.3  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score = 67.7 bits (158), Expect = 6e-13
 Identities = 30/32 (93%), Positives = 31/32 (96%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 344 SILASLSTFQQMWISKQEYDESGPGIVYRKCF 375


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 41.1 bits (92), Expect = 6e-05
 Identities = 17/23 (73%), Positives = 19/23 (82%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESG 70
           SILASL  FQ +W+SKQEYDE G
Sbjct: 396 SILASLDNFQHLWVSKQEYDEVG 418


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 41.1 bits (92), Expect = 6e-05
 Identities = 17/34 (50%), Positives = 26/34 (76%), Gaps = 3/34 (8%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGP---SIVHRKC 94
           SIL+SL TF Q+WIS+QEY+E G    +++ ++C
Sbjct: 399 SILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 30.3 bits (65), Expect = 0.11
 Identities = 14/32 (43%), Positives = 25/32 (78%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTF+++ I+ +EY ++  +++ R+ F
Sbjct: 349 SILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 12  PPSLPSNRCGSRNRSTTSLAPP 77
           PPS+PS+R   R  S ++ APP
Sbjct: 233 PPSIPSSRPPERVPSLSAPAPP 254


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 17   LSTFQQMWISKQEYDESGPSIV 82
            L  + + W  KQ++DES  S+V
Sbjct: 2195 LQKWYEEWCGKQDWDESDKSVV 2216


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 21  LPSNRCGSRNRSTTSLAPPLYTGSAS 98
           +P       + STT + PPL T S+S
Sbjct: 31  IPPGSLSENDNSTTFIKPPLETASSS 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,139
Number of Sequences: 5004
Number of extensions: 18712
Number of successful extensions: 48
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)