Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30155
(392 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0585 - 34912159-34912224,34912634-34913247,34913350-349137... 69 1e-12
05_01_0047 - 323097-323162,323287-323900,324233-324626,324718-32... 69 2e-12
01_07_0285 - 42476767-42476832,42476990-42477603,42477821-424782... 69 2e-12
12_01_0409 - 3230853-3230918,3231372-3231994,3232454-3232847,323... 68 2e-12
03_05_0926 + 28871800-28871859,28871943-28872336,28872586-288731... 68 2e-12
10_08_0597 + 19089616-19089675,19089789-19090182,19090451-190910... 65 2e-11
01_06_1455 + 37504175-37504231,37504357-37504750,37504865-375054... 65 2e-11
05_04_0450 - 21356877-21356942,21357482-21358095,21358173-213585... 65 2e-11
11_01_0403 + 3059650-3059709,3059807-3060200,3060275-3060930,306... 53 9e-08
12_02_1282 + 27528159-27529148,27529549-27529614 50 9e-07
03_06_0192 + 32230953-32231030,32231130-32231485,32232250-322324... 41 3e-04
08_01_0254 + 2078380-2078392,2078487-2078578,2079579-2079698,207... 31 0.33
07_03_0752 - 21241883-21242233,21242336-21242486,21242586-212428... 29 1.3
07_03_0008 + 12303536-12303893,12303910-12304176,12304635-123049... 29 1.8
03_02_0028 - 5118621-5119448 27 4.1
02_05_0615 - 30364956-30365729,30365813-30366286 27 4.1
07_03_0463 - 18449908-18450171,18450718-18450810,18451170-184512... 27 5.4
04_01_0501 - 6558120-6559312,6559441-6559518,6559818-6559877,656... 27 5.4
03_06_0303 - 32994697-32994831,32994959-32995096,32995205-329952... 27 5.4
01_01_0351 + 2790469-2790534,2791089-2791173,2791921-2792021,279... 27 5.4
02_05_0903 - 32630190-32630461,32631084-32631470,32631727-326318... 27 7.1
>03_06_0585 -
34912159-34912224,34912634-34913247,34913350-34913734,
34913824-34913883
Length = 374
Score = 68.9 bits (161), Expect = 1e-12
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 343 SILASLSTFQQMWISKGEYDESGPSIVHRKCF 374
>05_01_0047 -
323097-323162,323287-323900,324233-324626,324718-324777
Length = 377
Score = 68.5 bits (160), Expect = 2e-12
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct: 346 SILASLSTFQQMWISKDEYDESGPAIVHRKCF 377
>01_07_0285 -
42476767-42476832,42476990-42477603,42477821-42478214,
42478301-42478360
Length = 377
Score = 68.5 bits (160), Expect = 2e-12
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct: 346 SILASLSTFQQMWISKDEYDESGPAIVHRKCF 377
>12_01_0409 -
3230853-3230918,3231372-3231994,3232454-3232847,
3233000-3233059
Length = 380
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWISK EYDESGP+IVHRKCF
Sbjct: 349 SILASLSTFQQMWISKAEYDESGPAIVHRKCF 380
>03_05_0926 +
28871800-28871859,28871943-28872336,28872586-28873199,
28873281-28873346
Length = 377
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 346 SILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>10_08_0597 +
19089616-19089675,19089789-19090182,19090451-19091064,
19091160-19091225
Length = 377
Score = 65.3 bits (152), Expect = 2e-11
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWIS+ EY+ESGP+IVHRKCF
Sbjct: 346 SILASLSTFQQMWISRAEYEESGPAIVHRKCF 377
>01_06_1455 +
37504175-37504231,37504357-37504750,37504865-37505478,
37506021-37506086
Length = 376
Score = 65.3 bits (152), Expect = 2e-11
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct: 345 SILASLSTFQQMWISKAEYDESGPGIVHMKCF 376
>05_04_0450 -
21356877-21356942,21357482-21358095,21358173-21358566,
21358648-21358704
Length = 376
Score = 64.9 bits (151), Expect = 2e-11
Identities = 29/32 (90%), Positives = 29/32 (90%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWISK EYDESGP IVH KCF
Sbjct: 345 SILASLSTFQQMWISKGEYDESGPGIVHMKCF 376
>11_01_0403 +
3059650-3059709,3059807-3060200,3060275-3060930,
3060979-3061044
Length = 391
Score = 52.8 bits (121), Expect = 9e-08
Identities = 30/46 (65%), Positives = 31/46 (67%), Gaps = 14/46 (30%)
Frame = +2
Query: 2 SILASLSTFQQ--------------MWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQ MWISK EYDESGP+IVHRKCF
Sbjct: 346 SILASLSTFQQVNLTPTLYEVARMQMWISKGEYDESGPAIVHRKCF 391
>12_02_1282 + 27528159-27529148,27529549-27529614
Length = 351
Score = 49.6 bits (113), Expect = 9e-07
Identities = 22/30 (73%), Positives = 24/30 (80%)
Frame = +2
Query: 8 LASLSTFQQMWISKQEYDESGPSIVHRKCF 97
LA S +MWI+K EYDESGPSIVHRKCF
Sbjct: 322 LAPSSMKIKMWIAKAEYDESGPSIVHRKCF 351
>03_06_0192 +
32230953-32231030,32231130-32231485,32232250-32232425,
32233857-32234038,32234260-32234443,32235192-32235259,
32235343-32235495
Length = 398
Score = 41.1 bits (92), Expect = 3e-04
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
+ILA + Q ++K +YDE+GPSIVH+KCF
Sbjct: 367 AILAKVVFPQNQHVTKGDYDETGPSIVHKKCF 398
>08_01_0254 +
2078380-2078392,2078487-2078578,2079579-2079698,
2079924-2080097,2080184-2080257,2080847-2080927,
2081306-2081366,2081437-2081486,2082278-2082332,
2082599-2082676,2082757-2082810,2083703-2083756,
2083846-2083906,2084229-2084280,2085118-2085184,
2085393-2085452,2085546-2085608,2085752-2085814,
2086337-2086401,2086620-2086688,2086742-2086847
Length = 503
Score = 31.1 bits (67), Expect = 0.33
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQE 55
SILASL +FQQMW SK +
Sbjct: 452 SILASLGSFQQMWFSKAD 469
>07_03_0752 -
21241883-21242233,21242336-21242486,21242586-21242823,
21242917-21243127,21243214-21243344,21245046-21245931,
21246087-21246140,21246397-21246461,21246842-21246892,
21246960-21247029,21247493-21247597
Length = 770
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 132 RAAGGSDARCV*KHFLCTMEGPDS 61
RAAGG ARC+ LC E P S
Sbjct: 675 RAAGGEIARCIHVGLLCVQENPAS 698
>07_03_0008 +
12303536-12303893,12303910-12304176,12304635-12304951,
12304975-12305819,12305859-12306069
Length = 665
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -3
Query: 132 RAAGGSDARCV*KHFLCTM----EGPDSSYSCFEIHICWK 25
RA G CV + FLCT+ +G + C E H+ WK
Sbjct: 301 RALGWDKFACVDEPFLCTLLKVGDGVNFRLFCKEYHLSWK 340
>03_02_0028 - 5118621-5119448
Length = 275
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Frame = +3
Query: 54 STTSLA---PPLYTGSASKRTARRCLQQPAAG 140
+TT LA PP + GS +R RR QQP G
Sbjct: 22 TTTLLATDHPPFFPGSCPRRVPRRRPQQPPPG 53
>02_05_0615 - 30364956-30365729,30365813-30366286
Length = 415
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 27 SNRC-GSRNRSTTSLAPPLYTGSASKRTARRCLQQ 128
+N C G +T + APP Y AS RTA R L++
Sbjct: 256 NNDCHGGDPNATAATAPPEYAVRASFRTALRALRE 290
>07_03_0463 -
18449908-18450171,18450718-18450810,18451170-18451254,
18451607-18451705,18452099-18452238,18453036-18453482
Length = 375
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 199 ITIISYVQLN*RRLQA*IEQPAAGCWR 119
+T + +V L RLQ +E PAA CWR
Sbjct: 245 LTFVPFVVL---RLQKFLESPAATCWR 268
>04_01_0501 -
6558120-6559312,6559441-6559518,6559818-6559877,
6560000-6560083,6560407-6560566
Length = 524
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 134 RGLLEAATRGAFRSTSCVQWRGQ 66
RG +AATRGA RS+S W+ +
Sbjct: 3 RGESKAATRGANRSSSSSSWKSR 25
>03_06_0303 -
32994697-32994831,32994959-32995096,32995205-32995282,
32995399-32995475,32996355-32996676,32996756-32996986
Length = 326
Score = 27.1 bits (57), Expect = 5.4
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 57 TTSLAPPLYTGSASKRTARRCLQQPA 134
TT A P+ S+S RRC+ QPA
Sbjct: 4 TTMKASPMSASSSSAPVLRRCVAQPA 29
>01_01_0351 +
2790469-2790534,2791089-2791173,2791921-2792021,
2792601-2792683,2792829-2792874,2792969-2793025,
2793118-2793172,2793244-2793344,2793432-2793495,
2793604-2793737,2794158-2794346
Length = 326
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 215 RHYYVNYNYILRTIKLT--EITSLN*AAGRGLLEAATR 108
RH+ YNY+L + L +++ ++ AGRGL +R
Sbjct: 120 RHFLSLYNYLLEEVALVPDQLSKISVQAGRGLFLLLSR 157
>02_05_0903 -
32630190-32630461,32631084-32631470,32631727-32631817,
32632320-32632492,32632671-32632842
Length = 364
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 27 SNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQ 128
S+RC R R + APP +A+ CL Q
Sbjct: 82 SDRCNKRQRMAEAAAPPRRPAAAAANEDLHCLLQ 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,857,356
Number of Sequences: 37544
Number of extensions: 150955
Number of successful extensions: 412
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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