Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30155
         (392 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   2e-13
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)               72   2e-13
SB_56| Best HMM Match : Actin (HMM E-Value=0)                          72   2e-13
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                       72   2e-13
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)              71   4e-13
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)               71   4e-13
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                 62   2e-10
SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)                      29   1.0  
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 29   1.0  
SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_20112| Best HMM Match : EGF (HMM E-Value=0)                         27   4.1  
SB_45116| Best HMM Match : EGF (HMM E-Value=0)                         27   7.2  
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  

>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 345 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 344 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 344 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 345 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 70.5 bits (165), Expect = 4e-13
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 307 SILASLSTFQQMWISKQEYDESGPAIVHRKCF 338


>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 70.5 bits (165), Expect = 4e-13
 Identities = 31/32 (96%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 318 SILASLSTFQQMWISKQEYDESGPAIVHRKCF 349


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWI+K+EY E GP IVHRKCF
Sbjct: 118 SILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149


>SB_9926| Best HMM Match : DPPIV_N (HMM E-Value=0)
          Length = 1066

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 24   PSNRCGSRNRSTTSLAPPLYTGSASK--RTARRCLQQPAAGC 143
            P N+ G++ R   +L  P++TGS  +  RT +     P+A C
Sbjct: 879  PGNQAGNKTRPLRALRSPIHTGSTLEVDRTRQGTRPDPSARC 920


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 109
           S+LAS   F  +  +K +YDE GPSI     F  HR
Sbjct: 309 SMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343


>SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = +3

Query: 21  LPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQP 131
           L    C SR +      P  Y G    RT ++C  +P
Sbjct: 118 LVKRTCNSRKKKKPEKRPSSYNGDTDYRTRKQCRYEP 154


>SB_20112| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2112

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
 Frame = +3

Query: 6   SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQP---AAGCSIQACNLR*FN 176
           SS P      C  R  S +    P YTGS  +    RC   P    A C     +L  F+
Sbjct: 684 SSDPCQHGGTCSDRIGSYSCYCRPGYTGSNCQHPLDRCANDPCRNGATCRRTGEDLSDFH 743

Query: 177 C 179
           C
Sbjct: 744 C 744


>SB_45116| Best HMM Match : EGF (HMM E-Value=0)
          Length = 2023

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 15/59 (25%), Positives = 19/59 (32%)
 Frame = +3

Query: 6   SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQPAAGCSIQACNLR*FNCT 182
           +S P L    C           PP Y G+  +     C   P       A  +  FNCT
Sbjct: 281 ASNPCLNGGTCNDLVNGYNCNCPPGYNGTTCEIDINECASNPCVNGGTCADLVNGFNCT 339


>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3287

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +3

Query: 6   SSPPSLPSNRCGSRNRSTTSLAPPLYTGSASKRTARRCLQQP 131
           +S P     RC  R  S T   P  YTG+A       C  QP
Sbjct: 746 ASNPCAAYQRCIDRIDSYTCACPLGYTGNACDVNIDECASQP 787


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,787,239
Number of Sequences: 59808
Number of extensions: 166104
Number of successful extensions: 362
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)