Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30155
         (392 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical pr...    72   2e-13
Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical pr...    72   2e-13
Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical pr...    72   2e-13
Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical pr...    72   2e-13
X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.        72   2e-13
X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.        72   2e-13
X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.        72   2e-13
X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.        72   2e-13
U64601-7|AAK77622.1|  332|Caenorhabditis elegans Actin protein 4...    72   2e-13
U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4...    72   2e-13
U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4...    72   2e-13
AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical ...    56   1e-08
AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical...    44   5e-05
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    29   0.90 
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U28741-1|AAA68325.2|  256|Caenorhabditis elegans Hypothetical pr...    28   2.7  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   2.7  
AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical ...    27   4.8  

>Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical
           protein T25C8.2 protein.
          Length = 375

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 344 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.6 protein.
          Length = 376

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 345 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.5 protein.
          Length = 376

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 345 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.4 protein.
          Length = 376

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 345 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 345 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.
          Length = 375

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 344 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 345 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 345 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>U64601-7|AAK77622.1|  332|Caenorhabditis elegans Actin protein 4,
           isoform b protein.
          Length = 332

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 301 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 332


>U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4,
           isoform c protein.
          Length = 362

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 331 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 362


>U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4,
           isoform a protein.
          Length = 376

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 32/32 (100%), Positives = 32/32 (100%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 345 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical
           protein ZK616.4 protein.
          Length = 436

 Score = 55.6 bits (128), Expect = 1e-08
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKC 94
           SIL SL TFQQMW+SK EYDESG SIV +KC
Sbjct: 405 SILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435


>AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical
           protein Y53F4B.22 protein.
          Length = 374

 Score = 43.6 bits (98), Expect = 5e-05
 Identities = 16/32 (50%), Positives = 26/32 (81%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
           SI+ASL TF++MW+ K+EY++ G S +H++ F
Sbjct: 343 SIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 0.90
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 2   SILASLSTFQQMWISKQEYDESGPSI 79
           S+LAS S F Q+  +K EY E GPSI
Sbjct: 389 SMLASTSEFYQVSHTKAEYMERGPSI 414


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 156  KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 64
            +P  + R  A GG DA+C+ K + C  E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653


>U28741-1|AAA68325.2|  256|Caenorhabditis elegans Hypothetical
           protein F35D2.3 protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +2

Query: 53  EYDESGPSIVHRKCF*THRASLPPAARGRLLNSG 154
           +Y ++G SIV+ KC  T R   P   R R LN G
Sbjct: 30  DYCKNGGSIVNGKCECTLRYEGPQCERERCLNGG 63


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 156  KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 64
            +P  + R  A GG DA+C+ K + C  E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653


>AL032654-9|CAA21720.1|  404|Caenorhabditis elegans Hypothetical
           protein Y52B11A.9 protein.
          Length = 404

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 11  ASLSTFQQMWISKQEYDESGPSIVHRKCF*THRASLPPAAR 133
           A +S F    + K++ DE GPS   RK       S  PAA+
Sbjct: 225 AKISIFDMPKVKKEDPDEPGPSQPSRKSGKKRSRSRSPAAK 265


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,100,632
Number of Sequences: 27780
Number of extensions: 112670
Number of successful extensions: 285
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)