Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30155
(392 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 70 6e-13
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 68 2e-12
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 68 2e-12
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 68 2e-12
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 68 2e-12
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 68 2e-12
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 66 6e-12
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 66 6e-12
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 59 9e-10
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 56 9e-09
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 55 1e-08
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 50 6e-07
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 42 1e-04
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 29 0.85
At1g24530.1 68414.m03088 transducin family protein / WD-40 repea... 26 7.9
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 69.7 bits (163), Expect = 6e-13
Identities = 31/32 (96%), Positives = 31/32 (96%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct: 346 SILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 346 SILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 346 SILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 346 SILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 346 SILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 68.1 bits (159), Expect = 2e-12
Identities = 30/32 (93%), Positives = 31/32 (96%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct: 346 SILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 66.5 bits (155), Expect = 6e-12
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct: 346 SILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 66.5 bits (155), Expect = 6e-12
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLSTFQQMWISK EYDE+GP IVHRKCF
Sbjct: 346 SILASLSTFQQMWISKAEYDEAGPGIVHRKCF 377
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 59.3 bits (137), Expect = 9e-10
Identities = 24/32 (75%), Positives = 30/32 (93%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLST++QMWI+K EY+E+GP+IVH KCF
Sbjct: 298 SILASLSTYEQMWITKAEYEENGPAIVHTKCF 329
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 56.0 bits (129), Expect = 9e-09
Identities = 24/31 (77%), Positives = 27/31 (87%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKC 94
SILASLSTF QMWI+K EY+E G +IVHRKC
Sbjct: 335 SILASLSTFHQMWITKDEYEEHGAAIVHRKC 365
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 55.2 bits (127), Expect = 1e-08
Identities = 24/32 (75%), Positives = 27/32 (84%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
SILASLS+F MWI+K EYDE G +IVHRKCF
Sbjct: 347 SILASLSSFAPMWITKAEYDEQGGAIVHRKCF 378
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 50.0 bits (114), Expect = 6e-07
Identities = 21/31 (67%), Positives = 24/31 (77%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKC 94
SILASL +FQQMW SK EY+E G S + RKC
Sbjct: 410 SILASLGSFQQMWFSKSEYEEHGASYIQRKC 440
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 42.3 bits (95), Expect = 1e-04
Identities = 17/32 (53%), Positives = 24/32 (75%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
+ILA + Q ++K +YDE+GPS+VHRKCF
Sbjct: 332 AILAKVVFPQNQHVTKADYDETGPSVVHRKCF 363
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 29.5 bits (63), Expect = 0.85
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 97
S+LAS F+ M ++K EY+E G + R+ F
Sbjct: 389 SLLASSPDFESMCVTKAEYEELGSARCRRRFF 420
>At1g24530.1 68414.m03088 transducin family protein / WD-40 repeat
family protein similar to Vegetatible incompatibility
protein HET-E-1 (SP:Q00808) {Podospora anserina};
contains 7 WD-40 repeats (PF00400)
Length = 418
Score = 26.2 bits (55), Expect = 7.9
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = -3
Query: 72 GPDSSYSCFEI 40
GPDSSYSC E+
Sbjct: 354 GPDSSYSCLEV 364
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,710,428
Number of Sequences: 28952
Number of extensions: 105564
Number of successful extensions: 250
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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