Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30153
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    53   4e-08
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    51   2e-07
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    29   0.57 
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    28   1.7  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    27   3.0  
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p...    27   4.0  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   5.3  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.3  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    26   5.3  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    26   7.0  
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe...    25   9.2  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 2/148 (1%)
 Frame = +3

Query: 3   VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGATDXXXXXXXXXXXX 182
           ++P+V ++ + K+  ++ +++++ P  L   +  +IP P    +                
Sbjct: 302 IVPIVEQLSKQKIIYRISIRADY-PHKLSSSLNFRIPVPTNVVKANPRVNRGKAGYEPSE 360

Query: 183 XRYRMEDQAHGGHEGDPAVCRD*ALETDTKKK-WTRPPISMGFEV-PFAPSGFKVRYLKV 356
                +     G E +     +  L   T ++ W +PPIS+ F +  F  SG  V+YL+V
Sbjct: 361 NIINWKIPRFLG-ETELIFYAEVELSNTTNQQIWAKPPISLDFNILMFTSSGLHVQYLRV 419

Query: 357 FEPKLNYSDHDVIKWVRYIGRSGLYETR 440
            EP  + S +  IKWVRY  R+G  E R
Sbjct: 420 SEP--SNSKYKSIKWVRYSTRAGTCEIR 445



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/38 (52%), Positives = 23/38 (60%)
 Frame = +1

Query: 154 KGKAKYKASENAIVWKIKRMAGMKETQLSAEIELSRPT 267
           +GKA Y+ SEN I WKI R  G  E    AE+ELS  T
Sbjct: 351 RGKAGYEPSENIINWKIPRFLGETELIFYAEVELSNTT 388


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
 Frame = +3

Query: 33  TKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQ--RGATDXXXXXXXXXXXXXRYRMEDQ 206
           +++E  V  K+ FK   +   +++ IP P +    R  T               + ++  
Sbjct: 289 SRIEFMVKAKAQFKKRCIANNVQIIIPVPEDADSPRFQTSNGHVQYAPEQAAMVWNIKKF 348

Query: 207 AHGGHEGDPAVCRD*ALETDTKKKWTRPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSD 383
           A G      A     +++ +  +   + P+ + F +P F  SG +VRYLK+ EPKLNY  
Sbjct: 349 AGGKEFFMRAEMGLPSVKNEDIQVQKKRPVQLKFAIPYFTTSGIQVRYLKITEPKLNY-- 406

Query: 384 HDVIKWVRYIGRSG 425
              + WVRY+ ++G
Sbjct: 407 -HAMPWVRYVTQNG 419


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +1

Query: 271 RRSGRARPSPWGSKFPLHPPDSRSAT*RCLNRN*ITRTMTSSSGCATSDAPDS-TRRGAE 447
           + SG A+PS + +   LH  DSR           +T   + ++  + S AP+S T   ++
Sbjct: 33  KHSGTAKPSKFRAFIRLHFKDSRKFAFSRKKEKELTSEDSDAANQSPSGAPESQTEEESD 92

Query: 448 RRADG 462
           R+ DG
Sbjct: 93  RKIDG 97


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 115 LRMNTSGVQLICLKGKAKYKASENA 189
           LR+N   V+ + L+GK  Y + ENA
Sbjct: 170 LRLNPKNVEALVLRGKVMYYSGENA 194


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 207 LDLPYDSVLRGFILRFPLQANQLHPAGVHAELES 106
           L+ P   +LR   L  PLQ N + P GVH++  +
Sbjct: 432 LETPEPGLLRS--LMTPLQGNMVAPTGVHSQFNT 463


>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 571

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 226 ETQLSAEIELSRPTPRRSGRARPSPWGSKFPLHPPDSRS 342
           + Q+ ++   + PT  +S  A P  W S F    P+S S
Sbjct: 467 DEQVPSQSNNTTPTSAKSDSASPQNWFSSFSYQTPNSAS 505


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 312 VPFAPSGFKVRYLKVFEPKLNYSDHDVIKW 401
           VP+  + +   YLK+F  K N S  D+ +W
Sbjct: 206 VPYFSTAWFQFYLKLFSQKDNVSSSDLTRW 235


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 136 PRWCSCGVGIFTSIFC 89
           P+W SC +GIF  + C
Sbjct: 25  PQWASCNLGIFICLDC 40


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 259 RPTPRRSGRARPSPWGSKFPLHPPDSRSAT*R 354
           +PT  +  +  PSPW S+  L  PD    T R
Sbjct: 589 KPTTLQKQQQSPSPWRSELFLSDPDQNVLTPR 620


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 395 DDVMVRVIQFRFKHLQVADLESGGCKGNFEPHGD 294
           DD ++ +I+ +F+HL V  +  GG  G+    GD
Sbjct: 149 DDALLLMIEHKFRHLPV--VSDGGPDGSAGDEGD 180


>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 349

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +1

Query: 496 TNIRKYNKTNHTNTI*CNSYAVYNFT 573
           T I  YN TN TN   CN     NFT
Sbjct: 197 TTISHYNITNATNGTYCNGTNGTNFT 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,570
Number of Sequences: 5004
Number of extensions: 60724
Number of successful extensions: 173
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)