Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30153
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 87 1e-17
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 52 5e-07
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 52 5e-07
07_03_0956 - 22869166-22871145,22871800-22871959,22872311-228723... 30 1.8
03_06_0328 - 33172369-33173691 29 3.1
06_01_0917 - 7077934-7080339 29 4.1
04_04_1055 + 30444235-30446649 29 5.5
02_01_0539 + 3941189-3941896,3942110-3942394,3942508-3943394,394... 28 7.2
11_06_0562 + 25003246-25003746,25004975-25005214,25005576-250060... 28 9.6
03_05_0491 - 24868261-24869383,24869482-24869561,24870193-248702... 28 9.6
01_05_0663 - 24119355-24120101 28 9.6
>02_05_0373 +
28374298-28374380,28375126-28375303,28375975-28376065,
28376162-28376256,28376379-28376468,28376789-28376837,
28376941-28377079,28377224-28377340,28377437-28377527,
28377604-28377746,28378009-28378123,28378439-28378483,
28378565-28378645
Length = 438
Score = 87.0 bits (206), Expect = 1e-17
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Frame = +3
Query: 3 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGATDXXXXXXXXXXXX 182
V+P ++E+GRT+ME+ V +KS F + + VK+P P + + +
Sbjct: 294 VLPTIKELGRTRMEINVKVKSVFGAKMFALGVVVKVPVPKQTAKTSFQTTSGKAKYNASI 353
Query: 183 XRYRMEDQAHGGHEGDPAVCRD*ALET-DTKKKWTRPPISMGFEVP-FAPSGFKVRYLKV 356
+ + G + T KK W RPPI M F+VP F SG +VR+LKV
Sbjct: 354 DSLVWKIRKFPGQTEATMSAEVELISTMGEKKSWNRPPIQMEFQVPMFTASGLRVRFLKV 413
Query: 357 FEPKLNYSDHDVIKWVRYIGRSGLYETRC 443
+E S ++ ++WVRYI R+G YE RC
Sbjct: 414 WEK----SGYNTVEWVRYITRAGSYEIRC 438
Score = 44.8 bits (101), Expect = 8e-05
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = +1
Query: 157 GKAKYKASENAIVWKIKRMAGMKETQLSAEIELSRPTPRRSGRARP 294
GKAKY AS +++VWKI++ G E +SAE+EL + RP
Sbjct: 345 GKAKYNASIDSLVWKIRKFPGQTEATMSAEVELISTMGEKKSWNRP 390
>05_06_0262 -
26746180-26746278,26746371-26746493,26746584-26746725,
26746824-26746921,26747012-26747108,26747215-26747322,
26747900-26748003,26748170-26748268,26748373-26748435,
26748538-26748687,26748769-26748900
Length = 404
Score = 52.0 bits (119), Expect = 5e-07
Identities = 40/147 (27%), Positives = 67/147 (45%), Gaps = 5/147 (3%)
Frame = +3
Query: 15 VREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGATDXXXXXXXXXXXXXRYR 194
V + R+++++ V +S FK +E+++P P + + R
Sbjct: 262 VEKHSRSRIQITVKTRSQFKERSTATNVEIEVPVPEDSTN--PNIRTSMGSAAYAPERDA 319
Query: 195 MEDQAHGGHEGDPAVCR-D*ALETDTKKKWT---RPPISMGFEVP-FAPSGFKVRYLKVF 359
M + G +CR + +L + T + + PI + FE+P F SG +VRYLK+
Sbjct: 320 MVWKIKSFPGGKEYMCRAEFSLPSITSEDGMPEKKAPIRVKFEIPYFTVSGIQVRYLKII 379
Query: 360 EPKLNYSDHDVIKWVRYIGRSGLYETR 440
E S + + WVRYI +G YE R
Sbjct: 380 EK----SGYQALPWVRYITMAGEYELR 402
Score = 33.9 bits (74), Expect = 0.15
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = +1
Query: 157 GKAKYKASENAIVWKIKRMAGMKETQLSAEIELSRPTPRRSGRARPSPWGSKFPL 321
G A Y +A+VWKIK G KE AE L T + +P KF +
Sbjct: 309 GSAAYAPERDAMVWKIKSFPGGKEYMCRAEFSLPSITSEDGMPEKKAPIRVKFEI 363
>01_06_0412 +
29159918-29160046,29160148-29160297,29160385-29160447,
29160540-29160716,29160796-29160899,29162142-29162249,
29162336-29162432,29162540-29162637,29162718-29162859,
29162941-29163063,29163161-29163259
Length = 429
Score = 52.0 bits (119), Expect = 5e-07
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 5/147 (3%)
Frame = +3
Query: 15 VREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGATDXXXXXXXXXXXXXRYR 194
+ + R+++E+ V +S FK +E+++P P + + R
Sbjct: 287 IEKHSRSRIELMVKARSQFKERSTATNVEIEVPVPSDATN--PNIRTSMGSAAYAPERDA 344
Query: 195 MEDQAHGGHEGDPAVCR-D*ALETDTKKKWT---RPPISMGFEVP-FAPSGFKVRYLKVF 359
M + G +CR + +L + T ++ + PI + FE+P F SG +VRYLK+
Sbjct: 345 MVWKVKSFPGGKDYMCRAEFSLPSITAEEAAPEKKAPIRVKFEIPYFTVSGIQVRYLKII 404
Query: 360 EPKLNYSDHDVIKWVRYIGRSGLYETR 440
E S + + WVRYI +G YE R
Sbjct: 405 EK----SGYQALPWVRYITMAGEYELR 427
Score = 34.7 bits (76), Expect = 0.083
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = +1
Query: 157 GKAKYKASENAIVWKIKRMAGMKETQLSAEIELSRPTPRRSGRARPSPWGSKFPL 321
G A Y +A+VWK+K G K+ AE L T + + +P KF +
Sbjct: 334 GSAAYAPERDAMVWKVKSFPGGKDYMCRAEFSLPSITAEEAAPEKKAPIRVKFEI 388
>07_03_0956 -
22869166-22871145,22871800-22871959,22872311-22872375,
22872464-22872529,22872634-22872691,22872834-22872925,
22873093-22873332
Length = 886
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/66 (19%), Positives = 34/66 (51%)
Frame = +2
Query: 389 RHQVGALHRTLRTLRDEVLSDARTVSTKWLRESQRVRIFENTTKQTIQIQFNVIAMLYII 568
+H + AL + + L + V+ + +KW+++ +++E + + ++I YII
Sbjct: 122 KHFLIALAKERQDLAERVMITRLHLYSKWIKKCDHAKMYEKISNENLEIMRQSAQARYII 181
Query: 569 LRFISI 586
+ + S+
Sbjct: 182 VPYTSL 187
>03_06_0328 - 33172369-33173691
Length = 440
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 256 SRPTPRRSGRARPSPWGSKFPLHPPDS 336
SRP P S A +PW K PL PP++
Sbjct: 202 SRPPPPSSFSAVTTPWQFKNPLFPPET 228
>06_01_0917 - 7077934-7080339
Length = 801
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 222 HARHALDLPYDSVLRGFILRFPLQANQL 139
H LP D++LRG + RFP +A L
Sbjct: 223 HPEEVAGLPVDAILRGSVRRFPDEAGAL 250
>04_04_1055 + 30444235-30446649
Length = 804
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -2
Query: 285 ASTSSWCRSRELNLGRQLGLLHARHALDLPYDSVLRGFIL 166
A+ ++ RSR L LGR + R A LP +VLR +L
Sbjct: 110 AALTACARSRRLRLGRSVHAHMLRRARSLPDTAVLRNSLL 149
>02_01_0539 +
3941189-3941896,3942110-3942394,3942508-3943394,
3943473-3943643,3943726-3943744,3943763-3944014,
3944100-3944138,3944244-3944282
Length = 799
Score = 28.3 bits (60), Expect = 7.2
Identities = 24/74 (32%), Positives = 36/74 (48%)
Frame = +1
Query: 238 SAEIELSRPTPRRSGRARPSPWGSKFPLHPPDSRSAT*RCLNRN*ITRTMTSSSGCATSD 417
+A EL PT +RS A S ++ P P S + T R + T T+ ++ G A
Sbjct: 305 AAHKELGSPTEKRSSCA--STELAENPTSEPTSCTLTVRVMP----TFTVPAAEGLAYKP 358
Query: 418 APDSTRRGAERRAD 459
P++ GA+ RAD
Sbjct: 359 TPETRVHGAQLRAD 372
>11_06_0562 +
25003246-25003746,25004975-25005214,25005576-25006097,
25006184-25007248,25007350-25007656,25007761-25008001,
25008104-25008302,25008771-25008852,25008959-25009209,
25010061-25010219,25010220-25010603
Length = 1316
Score = 27.9 bits (59), Expect = 9.6
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 774 NYLGISFNVQDCSLFHVPFK 715
++LGI+FN C+ FH FK
Sbjct: 346 DFLGIAFNTSQCTSFHRGFK 365
>03_05_0491 -
24868261-24869383,24869482-24869561,24870193-24870249,
24870567-24870660,24871013-24871099,24871188-24871347,
24871440-24871674
Length = 611
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 207 AHGGH-EGDPAVCRD*ALETDTKKKWTR 287
AH G G P CRD +ET+ +++W R
Sbjct: 89 AHSGAGAGAPLRCRDGTVETEEERRWLR 116
>01_05_0663 - 24119355-24120101
Length = 248
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 356 HLQVADLESGGCKGNFEPHGDG 291
HL+ ADL GG G PHG G
Sbjct: 222 HLRQADLRRGGGGGGAMPHGPG 243
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,425,086
Number of Sequences: 37544
Number of extensions: 431739
Number of successful extensions: 1323
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1319
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -