Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30153
(781 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44) 93 2e-19
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_45609| Best HMM Match : Aerolysin (HMM E-Value=4.6) 29 3.2
SB_34468| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08) 28 9.8
SB_22637| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0) 28 9.8
>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
Length = 331
Score = 93.1 bits (221), Expect = 2e-19
Identities = 41/45 (91%), Positives = 41/45 (91%)
Frame = +3
Query: 309 EVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC 443
EVPFA SG KVRYLKVFEPKLNYSDHD IKWVRYI RSGLYETRC
Sbjct: 287 EVPFACSGLKVRYLKVFEPKLNYSDHDTIKWVRYISRSGLYETRC 331
Score = 66.1 bits (154), Expect = 3e-11
Identities = 31/34 (91%), Positives = 34/34 (100%)
Frame = +3
Query: 3 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEV 104
VIPLVREVGR++MEVKVVLKSNFKPS+LGQKIEV
Sbjct: 255 VIPLVREVGRSRMEVKVVLKSNFKPSILGQKIEV 288
>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1098
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 12 LVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGA 140
L+ R+K+ K KPSLLG++ V P EH R A
Sbjct: 205 LLLSAHRSKITSKEAENLRSKPSLLGKRSSVMFMEPREHSRQA 247
>SB_45609| Best HMM Match : Aerolysin (HMM E-Value=4.6)
Length = 223
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 345 SGP*IRRVQRELRTPWRWAGASTSSWCRSRELNL 244
S P +V+RE+R +TSSW R+REL +
Sbjct: 91 SSPLTHKVEREVRDTRTVTHTTTSSWKRARELGI 124
>SB_34468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 490
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 345 SGP*IRRVQRELRTPWRWAGASTSSWCRSRELNL 244
S P +V+RE+R +TSSW R+REL +
Sbjct: 297 SSPLTHKVEREVRDTRTVTHTTTSSWKRARELGI 330
>SB_11504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 44
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -1
Query: 565 YIQHSYYIKLYLYGLFCCIFEYSYSLR 485
Y + YY Y Y +CC F+ Y L+
Sbjct: 17 YYYYYYYYYYYYYYYYCCYFQQEYQLQ 43
>SB_40301| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2653
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -2
Query: 219 ARHALDLPYDSVLRGFILRFPLQANQLHPAGVHAELESSLRSS 91
A H L + S++ GF+L FP + + A V A +E R S
Sbjct: 655 AEHTLGHIFKSIVSGFLLDFPAEVRECADAIVGASVEIYARMS 697
>SB_32450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 28.3 bits (60), Expect = 7.4
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +1
Query: 163 AKYKASENAIVWKIKRMAGMKETQLSAEIEL 255
A+YK +E ++W++K + G E ++ +++L
Sbjct: 234 AEYKTAEKLLLWQVKSIRGGAEVAINIKLKL 264
>SB_25016| Best HMM Match : PDZ (HMM E-Value=5.6e-08)
Length = 816
Score = 27.9 bits (59), Expect = 9.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 464 SPSARRSAP-RLVESGASDVAHPLDDVMVRVIQFRFKHLQVA 342
SP A RS+P + S + + P+DD+ +R Q H Q+A
Sbjct: 203 SPGAERSSPINGIRSPVNGGSSPVDDISLRQSQLAELHTQLA 244
>SB_22637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 27.9 bits (59), Expect = 9.8
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = -3
Query: 449 RSAPRLVESGASDVAHPLDDVMVRVIQFRFKHLQVADLESGGCKGNFEPHG--DGRARPL 276
+S A+ + LD ++V+ I + H QVA L G C +P R RPL
Sbjct: 100 QSLKHFANRAANLIKSELDGLVVQEIFGKLAHAQVARLGGGQCSSR-KPLSLLKTRERPL 158
Query: 275 LLGVGLESSISAD 237
GL +S AD
Sbjct: 159 SDASGLSTSKVAD 171
>SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 729
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -3
Query: 530 VWFVLLYFRIFVLVAIHEAI*YSPSARRSAPRLVESGASD 411
VW +++ +FV + + +SP R+ R+ + GA D
Sbjct: 289 VWLLIIVVVLFVTIMMFVVDLWSPFGHRAEARITDEGAGD 328
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,929,183
Number of Sequences: 59808
Number of extensions: 456404
Number of successful extensions: 1217
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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