Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30153
(781 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 172 2e-43
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 172 2e-43
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 172 2e-43
Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical pr... 52 5e-07
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 52 5e-07
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 51 8e-07
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 49 3e-06
Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.92
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.92
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 31 0.92
U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical pr... 31 0.92
U41279-8|AAL02436.1| 307|Caenorhabditis elegans Hypothetical pr... 31 1.2
AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical ... 29 4.9
AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched relat... 29 4.9
U41279-10|AAK31426.2| 308|Caenorhabditis elegans Hypothetical p... 28 8.6
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 172 bits (419), Expect = 2e-43
Identities = 90/149 (60%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Frame = +3
Query: 3 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGATDXXXXXXXXXXXX 182
VIPLVREV R KMEVKVV+KSNFKPSLL QK+EV+IPTP
Sbjct: 293 VIPLVREVSRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGE 352
Query: 183 XRYRMEDQAHGGHEGDPAVCRD*ALETDT--KKKWTRPPISMGFEVPFAPSGFKVRYLKV 356
+ + G + L T KKKW RPP+SM FEVPFAPSG KVRYLKV
Sbjct: 353 NAIVWKIKRMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVPFAPSGLKVRYLKV 412
Query: 357 FEPKLNYSDHDVIKWVRYIGRSGLYETRC 443
FEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 413 FEPKLNYSDHDVIKWVRYIGRSGLYETRC 441
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/44 (88%), Positives = 43/44 (97%)
Frame = +1
Query: 124 NTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL 255
NTSGVQLIC+KGKAKYKA ENAIVWKIKRMAGMKE+Q+SAEI+L
Sbjct: 333 NTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDL 376
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 172 bits (419), Expect = 2e-43
Identities = 90/149 (60%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Frame = +3
Query: 3 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGATDXXXXXXXXXXXX 182
VIPLVREV R KMEVKVV+KSNFKPSLL QK+EV+IPTP
Sbjct: 287 VIPLVREVSRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGE 346
Query: 183 XRYRMEDQAHGGHEGDPAVCRD*ALETDT--KKKWTRPPISMGFEVPFAPSGFKVRYLKV 356
+ + G + L T KKKW RPP+SM FEVPFAPSG KVRYLKV
Sbjct: 347 NAIVWKIKRMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVPFAPSGLKVRYLKV 406
Query: 357 FEPKLNYSDHDVIKWVRYIGRSGLYETRC 443
FEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 407 FEPKLNYSDHDVIKWVRYIGRSGLYETRC 435
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/44 (88%), Positives = 43/44 (97%)
Frame = +1
Query: 124 NTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL 255
NTSGVQLIC+KGKAKYKA ENAIVWKIKRMAGMKE+Q+SAEI+L
Sbjct: 327 NTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDL 370
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 172 bits (419), Expect = 2e-43
Identities = 90/149 (60%), Positives = 97/149 (65%), Gaps = 2/149 (1%)
Frame = +3
Query: 3 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGATDXXXXXXXXXXXX 182
VIPLVREV R KMEVKVV+KSNFKPSLL QK+EV+IPTP
Sbjct: 293 VIPLVREVSRNKMEVKVVVKSNFKPSLLAQKLEVRIPTPPNTSGVQLICMKGKAKYKAGE 352
Query: 183 XRYRMEDQAHGGHEGDPAVCRD*ALETDT--KKKWTRPPISMGFEVPFAPSGFKVRYLKV 356
+ + G + L T KKKW RPP+SM FEVPFAPSG KVRYLKV
Sbjct: 353 NAIVWKIKRMAGMKESQISAEIDLLSTGNVEKKKWNRPPVSMNFEVPFAPSGLKVRYLKV 412
Query: 357 FEPKLNYSDHDVIKWVRYIGRSGLYETRC 443
FEPKLNYSDHDVIKWVRYIGRSGLYETRC
Sbjct: 413 FEPKLNYSDHDVIKWVRYIGRSGLYETRC 441
Score = 86.2 bits (204), Expect = 2e-17
Identities = 39/44 (88%), Positives = 43/44 (97%)
Frame = +1
Query: 124 NTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIEL 255
NTSGVQLIC+KGKAKYKA ENAIVWKIKRMAGMKE+Q+SAEI+L
Sbjct: 333 NTSGVQLICMKGKAKYKAGENAIVWKIKRMAGMKESQISAEIDL 376
>Z83115-5|CAJ85757.1| 58|Caenorhabditis elegans Hypothetical
protein K11D2.3b protein.
Length = 58
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +3
Query: 285 RPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 440
RPPI + FE+P F SG +VRYLK+ E S + + WVRYI ++G YE R
Sbjct: 8 RPPIKVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGEYEMR 56
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 52.0 bits (119), Expect = 5e-07
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +3
Query: 285 RPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 440
RPPI + FE+P F SG +VRYLK+ E S + + WVRYI ++G YE R
Sbjct: 372 RPPIKVKFEIPYFTTSGIQVRYLKIIEK----SGYQALPWVRYITQNGEYEMR 420
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 157 GKAKYKASENAIVWKIKRMAGMKETQLSAEIEL 255
G KY ++A VW IK G KE L+A + L
Sbjct: 329 GSVKYTPEQSAFVWTIKNFPGGKEYLLTAHLSL 361
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 51.2 bits (117), Expect = 8e-07
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +3
Query: 285 RPPISMGFEVP-FAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 440
RPPI + FE+P F SG +VRYLK+ E + + + WVRYI ++G YE R
Sbjct: 372 RPPIKVKFEIPYFTTSGIQVRYLKIIEKR----GYQALPWVRYITQNGEYEMR 420
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 157 GKAKYKASENAIVWKIKRMAGMKETQLSAEIEL 255
G KY ++A VW IK G KE L+A + L
Sbjct: 329 GSVKYTPEQSAFVWTIKNFPGGKEYLLTAHLSL 361
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 49.2 bits (112), Expect = 3e-06
Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +3
Query: 285 RPPISMGFEVPF-APSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETR 440
RPPI++ FE+P+ SG +VRYLK+ E S + + WVRY+ ++G Y+ R
Sbjct: 376 RPPINVKFEIPYYTTSGLQVRYLKIIEK----SGYQALPWVRYVTQNGDYQMR 424
>Z47074-1|CAA87375.2| 851|Caenorhabditis elegans Hypothetical
protein K07C10.1 protein.
Length = 851
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Frame = -2
Query: 615 ITLFYYE---YSLI-EMKRKIIYSIAITLNCICMVCFVV 511
ITLF Y+ Y LI +K +++ S+AIT C+ + CFV+
Sbjct: 651 ITLFDYDGTIYDLIITVKGELVKSLAITFTCMTIACFVI 689
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 31.1 bits (67), Expect = 0.92
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 327 SGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 434
+G VR+L V+ + N +D D + +R I RSGLYE
Sbjct: 2015 TGSDVRHLLVYVTQTNPTDADPSELLRTIKRSGLYE 2050
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 31.1 bits (67), Expect = 0.92
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 327 SGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 434
+G VR+L V+ + N +D D + +R I RSGLYE
Sbjct: 2015 TGSDVRHLLVYVTQTNPTDADPSELLRTIKRSGLYE 2050
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 31.1 bits (67), Expect = 0.92
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3
Query: 327 SGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYE 434
+G VR+L V+ + N +D D + +R I RSGLYE
Sbjct: 2015 TGSDVRHLLVYVTQTNPTDADPSELLRTIKRSGLYE 2050
>U32305-1|AAK18854.2| 469|Caenorhabditis elegans Hypothetical
protein B0336.6 protein.
Length = 469
Score = 31.1 bits (67), Expect = 0.92
Identities = 21/56 (37%), Positives = 26/56 (46%)
Frame = -2
Query: 216 RHALDLPYDSVLRGFILRFPLQANQLHPAGVHAELESSLRSSVRAGRA*SYSSAQP 49
RH L P +S+L G R P Q + + S V AGR SYSS+QP
Sbjct: 343 RHDLPPPPNSLLTGMSSRMPTQDDMDDLPPPPESVGGSSAYGVFAGRTESYSSSQP 398
>U41279-8|AAL02436.1| 307|Caenorhabditis elegans Hypothetical
protein C17C3.12b protein.
Length = 307
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 3 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPH 122
V PLVRE+ R K +LK F L+G KI+ K+ H
Sbjct: 55 VKPLVREMDRDARINKQLLKKAFDLKLMGLKIDPKLAPSH 94
>AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical
protein Y11D7A.11 protein.
Length = 313
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 172 YTSLSPSSKSVAPRWCSCGVGIFTSIFCPSREG 74
Y + S SS S + CSCG+G+ P R G
Sbjct: 104 YDAASTSSSSSSDSCCSCGIGLAGPAGFPGRPG 136
>AF043697-2|AAB97556.1| 820|Caenorhabditis elegans Patched related
family protein 11 protein.
Length = 820
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -2
Query: 567 IIYSIAITLNCICMVCFVVFSN 502
+I SIA+T+ C+ +VCFV +N
Sbjct: 640 LIGSIAVTVVCMAIVCFVFIAN 661
>U41279-10|AAK31426.2| 308|Caenorhabditis elegans Hypothetical
protein C17C3.12a protein.
Length = 308
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 3 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVK 107
V PLVRE+ R K +LK F L+G KI+ K
Sbjct: 55 VKPLVREMDRDARINKQLLKKAFDLKLMGLKIDPK 89
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,004,476
Number of Sequences: 27780
Number of extensions: 350012
Number of successful extensions: 1077
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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