Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30153
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.79 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    25   1.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 304 GSKFPLHPPDSRSAT*RCLNRN*ITRTMTSSSGCATS 414
           GS+ PLHPP S ++    +     T T T+++  AT+
Sbjct: 90  GSR-PLHPPASSTSLPATITTTTTTTTTTTATAAATA 125


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 771 YLGISFNVQDCSLFHVPFKHFKIKATFF*IRY 676
           Y+ I F  +DCSLF  P      K TF  + Y
Sbjct: 87  YIEIKFTTRDCSLF--PGNALSCKETFSLLYY 116


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +3

Query: 315 PFAPSGFKVRYLKVFEPKLNYSDHDVIKW 401
           PF PSG  ++ +     +LN+   D+ +W
Sbjct: 285 PFRPSGTVLKDINRQVDELNFDIQDLERW 313


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 484 IATSTNIRKYNKTNHTNTI*CNSYAVYNFTFHF 582
           I++ +N  KY+  N+ N    N+Y  YN   ++
Sbjct: 315 ISSLSNNYKYSNYNNYNNYNNNNYNNYNKKLYY 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,030
Number of Sequences: 438
Number of extensions: 4884
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)