Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30153
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 87 9e-18
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 64 1e-10
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 48 5e-06
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 48 7e-06
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 41 0.001
At3g59070.1 68416.m06585 auxin-responsive protein, putative simi... 29 3.5
At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein ... 29 3.5
At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR... 29 4.6
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 87.4 bits (207), Expect = 9e-18
Identities = 52/149 (34%), Positives = 75/149 (50%), Gaps = 2/149 (1%)
Frame = +3
Query: 3 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGATDXXXXXXXXXXXX 182
V+P ++E+GRT+MEV V +KS F + + VKIP P + +
Sbjct: 294 VLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTNFQVTTGRAKYNPSI 353
Query: 183 XRYRMEDQAHGGHEGDPAVCRD*ALET-DTKKKWTRPPISMGFEVP-FAPSGFKVRYLKV 356
+ + G + T KK WTRPPI M F+VP F SG +VR+LKV
Sbjct: 354 DCLVWKIRKFPGQTESTLSAEIELISTMGEKKSWTRPPIQMEFQVPMFTASGLRVRFLKV 413
Query: 357 FEPKLNYSDHDVIKWVRYIGRSGLYETRC 443
+E S ++ ++WVRYI ++G YE RC
Sbjct: 414 WEK----SGYNTVEWVRYITKAGSYEIRC 438
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 157 GKAKYKASENAIVWKIKRMAGMKETQLSAEIELSRPTPRRSGRARP 294
G+AKY S + +VWKI++ G E+ LSAEIEL + RP
Sbjct: 345 GRAKYNPSIDCLVWKIRKFPGQTESTLSAEIELISTMGEKKSWTRP 390
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 63.7 bits (148), Expect = 1e-10
Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Frame = +3
Query: 3 VIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGATDXXXXXXXXXXXX 182
V+P ++E+GRT+MEV V +KS F + + VKIP P + +
Sbjct: 294 VLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKQTAKTNFQVTTGRAKYNPSI 353
Query: 183 XRYRMEDQAHGGHEGDPAVCRD*ALET-DTKKKWTRPPISMGFEVP-FAPSGFKVRYLKV 356
+ + G + T KK WTRPPI M F+VP F SG +VR+LKV
Sbjct: 354 DCLVWKIRKFPGQTESTLSAEIELISTMGEKKSWTRPPIQMEFQVPMFTASGLRVRFLKV 413
Score = 43.6 bits (98), Expect = 2e-04
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 157 GKAKYKASENAIVWKIKRMAGMKETQLSAEIELSRPTPRRSGRARP 294
G+AKY S + +VWKI++ G E+ LSAEIEL + RP
Sbjct: 345 GRAKYNPSIDCLVWKIRKFPGQTESTLSAEIELISTMGEKKSWTRP 390
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 48.4 bits (110), Expect = 5e-06
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Frame = +3
Query: 30 RTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGATDXXXXXXXXXXXXXRYRMEDQA 209
R+++E+ + +S FK +E+++P P + + ++
Sbjct: 291 RSRVEMLIKARSQFKERSTATNVEIELPVPTDASNPTVRTSLGSASYAPEKDALVWKIKS 350
Query: 210 HGGHEGDPAVCRD*ALETDTKKKWT---RPPISMGFEVP-FAPSGFKVRYLKVFEPKLNY 377
G++ + + + L + T ++ T + PI + FE+P F SG +VRYLK+ E
Sbjct: 351 FPGNK-EYMLRAEFHLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEK---- 405
Query: 378 SDHDVIKWVRYIGRSGLYETR 440
S + + WVRYI +G YE R
Sbjct: 406 SGYQALPWVRYITMAGEYELR 426
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/55 (38%), Positives = 27/55 (49%)
Frame = +1
Query: 157 GKAKYKASENAIVWKIKRMAGMKETQLSAEIELSRPTPRRSGRARPSPWGSKFPL 321
G A Y ++A+VWKIK G KE L AE L T + R +P KF +
Sbjct: 333 GSASYAPEKDALVWKIKSFPGNKEYMLRAEFHLPSITAEEATPERKAPIRVKFEI 387
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 48.0 bits (109), Expect = 7e-06
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Frame = +3
Query: 30 RTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGATDXXXXXXXXXXXXXRYRMEDQA 209
R+++E+ V +S FK +E+++P P + + Q
Sbjct: 291 RSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDVRTSLGSAAYAPEKDALVWKIQY 350
Query: 210 HGGHEGDPAVCRD*ALETDTKKKWT---RPPISMGFEVP-FAPSGFKVRYLKVFEPKLNY 377
G++ + + D L + ++ T + PI + FE+P F SG +VRYLK+ E K Y
Sbjct: 351 FYGNK-EHTLKADFHLPSIAAEEATPERKAPIRVKFEIPKFIVSGIQVRYLKIIE-KSGY 408
Query: 378 SDHDVIKWVRYIGRSGLYETR 440
H WVRYI +G YE R
Sbjct: 409 QAHP---WVRYITMAGEYELR 426
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 40.7 bits (91), Expect = 0.001
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 6/149 (4%)
Frame = +3
Query: 12 LVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPHEHQRGATDXXXXXXXXXXXXXRY 191
L+ E GR K EV + +++ F ++ I V++P P+ R + +
Sbjct: 305 LIEEAGRLKAEVIIKIRAEFPSDIIANTITVQMPLPNYTSRASFELEPGAAGQRTDFKES 364
Query: 192 R--ME---DQAHGGHEGDPAVCRD*ALETDTKKKWTRPPISMGFEVP-FAPSGFKVRYLK 353
+E + GG E + E P+SM F +P + S +V+YL+
Sbjct: 365 NKMLEWNLKKIVGGGEHTLRAKLTFSQEFHGNITKEAGPVSMTFTIPMYNVSKLQVKYLQ 424
Query: 354 VFEPKLNYSDHDVIKWVRYIGRSGLYETR 440
+ + +Y+ + +WVRY+ ++ Y R
Sbjct: 425 IAKKSSSYNPY---RWVRYVTQANSYVAR 450
>At3g59070.1 68416.m06585 auxin-responsive protein, putative similar
to auxin-induced protein AIR12 (GI:11357190)
[Arabidopsis thaliana]
Length = 466
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 143 SCTPLVFMRSWNLHFDLLSEQGGLEVTLQHN 51
SCT L+ + S+ LHF+ E G LE+ H+
Sbjct: 50 SCTDLLVLNSY-LHFNYAQETGVLEIAYHHS 79
>At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 470
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/74 (27%), Positives = 32/74 (43%)
Frame = -2
Query: 306 TPWRWAGASTSSWCRSRELNLGRQLGLLHARHALDLPYDSVLRGFILRFPLQANQLHPAG 127
T WR S S++ LN+ R+L ++ RH + Y G+ LR ++ L G
Sbjct: 43 TYWRRLMNSVSAFRNGSSLNISRKLSMMRKRHTI---YTRSTNGYSLR---KSKVLSVGG 96
Query: 126 VHAELESSLRSSVR 85
H + S+ R
Sbjct: 97 SHLKWSKSIERDSR 110
>At1g65850.1 68414.m07472 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1036
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -2
Query: 327 RVQRELRTPWRWAGASTSSWCRSRELNLGRQLGLLHARHALDL 199
+V + LRT + +S SW R R+L L L HALD+
Sbjct: 774 KVLKLLRTTIKEVPSSIKSWPRLRDLELSYNQNLKGFMHALDI 816
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,117,059
Number of Sequences: 28952
Number of extensions: 327423
Number of successful extensions: 947
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 942
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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