Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30152X
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    26   4.0  
SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.9  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   9.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.1  
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    25   9.1  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    25   9.1  

>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 329 YFFADRTSYTQNVLHSCKRV 388
           Y+ AD   + QN+L+ C+R+
Sbjct: 142 YYLADTLRHNQNILNLCERI 161


>SPCC1494.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 252 IVHFIHLPIITGAYPGFTTNIIKIYSIFLLTVLPTHKMYCIVV 380
           + H++ +P        F  N I ++   ++TVL T   Y IV+
Sbjct: 392 VKHYLTVPKSKEKISAFFKNNINLFEESVVTVLSTESKYPIVI 434


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 261 FIHLPIITGAYPGFTTNIIKIYSIFLLTVLPTH 359
           F  LP   G Y G T+ I+K Y   L T + TH
Sbjct: 204 FSRLPGYFGTYLGLTSQIVKGYDC-LRTGIATH 235


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 454 KLITTSIKYVQQYIIILRV 398
           KL+    +YV QYI +LRV
Sbjct: 742 KLVVDDTRYVHQYIDLLRV 760


>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 252 IVHFIHLPIITGAYPGFTTNIIKIYSIFLLTVLPTHKM 365
           +V  ++LP      P FT++II  YS+F +    T  +
Sbjct: 8   VVTILNLPTPISLAPYFTSSIILKYSMFRIASRQTRNL 45


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +3

Query: 261 FIHLPIITGAYPGFTTNIIKIYSIFLLTVLPTHKMYC 371
           F + P++ GA+P        + ++FL  V P ++ +C
Sbjct: 241 FSNSPVVFGAFPSLHAGWAMLEALFLSHVFPRYR-FC 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,102,917
Number of Sequences: 5004
Number of extensions: 42324
Number of successful extensions: 97
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)