Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30152X
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462...    28   4.0  
03_02_0960 - 12739024-12739085,12739586-12739783,12739874-12739988     27   7.0  

>08_01_0533 +
           4625376-4625709,4625799-4625966,4627428-4627689,
           4627787-4627934,4628453-4628496,4628812-4628859,
           4629245-4630509,4630741-4630839,4630916-4631097,
           4631186-4631246,4631488-4631725,4631818-4631971,
           4632042-4632335
          Length = 1098

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -1

Query: 479 FLLYVQRLKINNYVYKICSTVYNYSSCSVR 390
           FLLY+  ++  NY Y + ST  +YSS SVR
Sbjct: 22  FLLYLAPIRDKNYSYLMIST--SYSSTSVR 49


>03_02_0960 - 12739024-12739085,12739586-12739783,12739874-12739988
          Length = 124

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -2

Query: 169 WDEWLM---PATDM*RTVKHSFANLAAVQMGSHTQFANPFALPPT 44
           WD+ +    P T + R  KH+ A  AAV++   T  A   A+PPT
Sbjct: 8   WDDTVAGPRPDTGLGRLRKHAAARPAAVKINDPTGDAAMVAVPPT 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,481,165
Number of Sequences: 37544
Number of extensions: 229861
Number of successful extensions: 398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)