Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30152X
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)                 30   1.0  
SB_45214| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_12275| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_48755| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
          Length = 421

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +3

Query: 216 YHNIINTFVR*QIVHFIHLPIITGAYPGFTTNIIKIYSIFLLTVLPTHKMYCIVVNV*SY 395
           Y +  N  V+ Q+V F + PI         T II I  + L  V+P   +  + V V  Y
Sbjct: 177 YQSSTNILVKFQVVDFQYTPICGSDEEDLKTTIISITILVLNYVIPVMILTVMSVRVLKY 236

Query: 396 TTRR 407
             RR
Sbjct: 237 LHRR 240


>SB_45214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 9   KEEKFVRHS*TSVGGSANGFAN*VCEPICTAARFANECLT 128
           +EE FVR S T+  G     A  + EPI T     N+ +T
Sbjct: 102 REEAFVRPSMTTTYGGITSEARGIPEPIVTTGSAMNDSVT 141


>SB_12275| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 114

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 166 PIEMKLNKVIVGTLKVSIIISLTRLLDNKLCISY 267
           P+++  N+   GT  V   IS+ R+L+N L +SY
Sbjct: 78  PVQIGTNRYKTGTKPVQKGISVGRVLNNYLTLSY 111


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,459,599
Number of Sequences: 59808
Number of extensions: 305935
Number of successful extensions: 567
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)