Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30152X
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    30   1.2  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    29   2.0  

>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = -1

Query: 458 LKINNYVYKICSTVYNYSSCSVRSHVYNYAIHFVCRKYGQQKNTVYFNYISCEARVRSSD 279
           + IN ++       YN   CSV+  V   A+++V + YG  K++       C+  +  + 
Sbjct: 100 IAINRFIAMYAPLHYN-KLCSVKVSVVIMALYYVKKIYGSLKSSYSVYEAGCQQYLDLAT 158

Query: 278 YR*MYEMHNL--LSNKRVND--IMIETFRVPTITLLSFISM 168
           ++  YE  +    S   V+D    I  F V  + LL  I++
Sbjct: 159 FKRQYENASCESTSTNNVDDFGFFIFLFSVGYLVLLYVINL 199


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -1

Query: 98  CANGFAYSICEPVCASSY--TCLRMSHEFLLL 9
           CAN    S+C+P C  S   +C+R SH+  LL
Sbjct: 104 CANKAQTSVCQPSCQKSCVDSCVRNSHQPQLL 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,760,302
Number of Sequences: 27780
Number of extensions: 243106
Number of successful extensions: 617
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)