Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30152X
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.1  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   4.4  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 449 NNYVYKICSTVYNYSSCSVRSHVYNYAIH 363
           NNY Y   +  YNY++ + + +  NY I+
Sbjct: 320 NNYNYNNNNYKYNYNNYNKKLYYKNYIIN 348


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 326 QYFFADRTSYTQNVLHSCKRVILH 397
           ++ ++ +T     VLHS  +VI+H
Sbjct: 219 EHDWSSKTETNATVLHSINKVIIH 242


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = -1

Query: 434 KICSTVYNYSSCSVRSHVYNYAIHFVCRKYGQQKNTVYFNYI 309
           KI S++ N +  +  ++ YNY   +        K   Y NYI
Sbjct: 80  KIISSLSNKTIHNNNNYKYNYNNKYNYNNNNYNKKLYYKNYI 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,426
Number of Sequences: 438
Number of extensions: 2891
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)