Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30152X
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07530.1 68414.m00806 scarecrow-like transcription factor 14 ...    28   4.4  
At1g08280.1 68414.m00914 glycosyl transferase family 29 protein ...    27   5.8  

>At1g07530.1 68414.m00806 scarecrow-like transcription factor 14
           (SCL14) identical to GB:AAD24412 from [Arabidopsis
           thaliana] (Plant J. 18 (1), 111-119 (1999))
          Length = 769

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 266 TSTDNHWSVPGLHN 307
           TS+D+HWSV GL N
Sbjct: 166 TSSDSHWSVDGLEN 179


>At1g08280.1 68414.m00914 glycosyl transferase family 29 protein /
           sialyltransferase family protein contains Pfam profile:
           PF00777 sialyltransferase (Glycosyltransferase family
           29)
          Length = 398

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 7/109 (6%)
 Frame = -1

Query: 314 YISC-----EARVRSSDYR*MYEMHNLLSNKRVNDIMIETF--RVPTITLLSFISMG*VA 156
           Y+SC        + +S Y  + + H ++   R+N+   E F  +V + T +SFI+   + 
Sbjct: 174 YLSCAVVGNSGTLLNSQYGDLIDKHEIVI--RLNNAKTERFEKKVGSKTNISFINSNILH 231

Query: 155 YAGH*HVKDRQTFIRKPSGCANGFAYSICEPVCASSYTCLRMSHEFLLL 9
             G      R++    P G        IC+P+    YT  + SH   LL
Sbjct: 232 QCGR-----RESCYCHPYGETVPIVMYICQPIHVLDYTLCKPSHRAPLL 275


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,475,024
Number of Sequences: 28952
Number of extensions: 200097
Number of successful extensions: 384
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)