Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30151
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 107 9e-25
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 103 2e-23
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.070
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.1
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 27 1.5
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 27 2.0
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.5
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 4.6
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 6.1
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 6.1
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 6.1
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 6.1
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 107 bits (257), Expect = 9e-25
Identities = 44/77 (57%), Positives = 61/77 (79%)
Frame = +2
Query: 23 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 202
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 203 KIHKRSKIKPFVKVVNY 253
+I KRS++KPF+KV+NY
Sbjct: 61 RIAKRSRVKPFIKVINY 77
Score = 49.6 bits (113), Expect = 2e-07
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = +1
Query: 226 KAFREGCKLYHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 399
K F + HLMPTRY ++ K + +P++R + + FEE+Y++GK+
Sbjct: 69 KPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEEKYQTGKSA 128
Query: 400 WFFQKLRF 423
WFF LRF
Sbjct: 129 WFFTPLRF 136
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 103 bits (246), Expect = 2e-23
Identities = 42/77 (54%), Positives = 60/77 (77%)
Frame = +2
Query: 23 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 202
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 203 KIHKRSKIKPFVKVVNY 253
+I +RS++KPF+KVVNY
Sbjct: 61 RIARRSRVKPFIKVVNY 77
Score = 56.4 bits (130), Expect = 2e-09
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +1
Query: 226 KAFREGCKLYHLMPTRYTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 399
K F + HLMPTRY ++ K +A K+P +R R + FEE+Y+SGK+
Sbjct: 69 KPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEEKYQSGKSA 128
Query: 400 WFFQKLRF 423
WFF LRF
Sbjct: 129 WFFTPLRF 136
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.070
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +2
Query: 14 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 115
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +2
Query: 29 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 112
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 27.1 bits (57), Expect = 1.5
Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Frame = +1
Query: 88 GYRSQELRRRYLRQAVRACFRRWYRQVPPESAQEDGK--E*NPQEVQDKAFREGCKLYHL 261
G RS +R R A R+ RR P E + K + E+ + + GC +
Sbjct: 525 GGRSSAMRVSIERSAARSGTRRSQGN-PYEGYRTRRKWTDEEENELYEMISQHGCCWSKI 583
Query: 262 MPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 396
+ + + + F +KD A+ K RF + R +E Y N
Sbjct: 584 IHIQKLENGPLKTFGPTQIKDKARLIKARFMKQNRLQELYSKSLN 628
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = -2
Query: 129 LSEVPSS*FLTTIALRPAYRPLKTSTTLPGFIILPILEGYSLY 1
L E+P + F T+ AY P S T+ G + G +Y
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDGLQRYTSMIGNQIY 731
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.8 bits (54), Expect = 3.5
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 223 LGPLVDFILSHPLVHFPGVPVDTSDESMPVRLVGGTFV 110
LGP+ + + L HFP DT + S P GGT V
Sbjct: 1364 LGPIGETFEVNGLSHFPSDIEDTIERSHPRIARGGTAV 1401
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 4.6
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 286 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 420
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 176 KVHKRMGKNKIHKRSKIKPFVKVV 247
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.0 bits (52), Expect = 6.1
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Frame = +1
Query: 73 VRGSQGYRSQELRRRYLRQAVRACFRRWYRQVPPE----------SAQEDGKE*NPQEVQ 222
++G Y + E R L++++ FR+ + E S + GK+ +PQ +
Sbjct: 751 IKGLISYYAHESGVRNLKKSIEKIFRKTSFSIVKEIDDELNSKEKSTGKSGKKTSPQSSE 810
Query: 223 DKAFREGCKLYHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNT 357
D A +E + +P + ++ EK K L P + ++T
Sbjct: 811 DAANKEASSVPLKVPDKVNIEIE-EKDLTKYLGPPIYTSQRLYDT 854
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 280 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 396
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +1
Query: 280 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 378
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,984,171
Number of Sequences: 5004
Number of extensions: 40694
Number of successful extensions: 138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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