Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30151
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)             127   4e-30
SB_48281| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)               28   4.7  
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.7  
SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)                   28   4.7  
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             28   4.7  
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)                 28   4.7  
SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.2  
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)                  27   6.2  
SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)                   27   6.2  
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               27   8.2  
SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7)             27   8.2  
SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)                   27   8.2  

>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
          Length = 168

 Score =  127 bits (307), Expect = 4e-30
 Identities = 56/77 (72%), Positives = 66/77 (85%)
 Frame = +2

Query: 23  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 202
           MGK +K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP KV KRMGK 
Sbjct: 1   MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60

Query: 203 KIHKRSKIKPFVKVVNY 253
           +  KRSK+KPFVKV NY
Sbjct: 61  RTAKRSKVKPFVKVFNY 77



 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
 Frame = +1

Query: 169 PPESAQEDGKE*NPQEVQDKAFREGCKLYHLMPTRYTVDFSFEKFSA-KDL-KDPAKRKK 342
           P +  +  GK+   +  + K F +     HLMPTRY+VD   +K    KD+ +DPA +KK
Sbjct: 50  PLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKK 109

Query: 343 LRFNTRVRFEERYKSGKNKWFFQKL 417
                +   EERYKSGKNKWFFQKL
Sbjct: 110 ALREVKSTLEERYKSGKNKWFFQKL 134


>SB_48281| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 229

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
 Frame = +1

Query: 109 RRRYLRQAV---RACFRRWYRQVPPESAQEDG---KE*NPQEVQDKAFREGCKLYH 258
           +RR L   +   +AC  +WY++V P +A + G   K  N + ++ K F+   K +H
Sbjct: 6   KRRTLENIIENFKACVLKWYQEVDPTNAIKRGQIAKTFNDEIIRFKRFQAAYKEWH 61


>SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 245 QPSRKALSWTSCGFYSFPSSCALSGGTCRY-QRRKHARTAC 126
           QP + A S    GFYS+ + C      C Y ++  H ++ C
Sbjct: 97  QPVKPARSNNCGGFYSYTTECPAKEKICNYCKKPNHFKSVC 137


>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 307 AKDL--KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 423
           +KDL  + P   +K  FN  +  E R++ G  K F+++LRF
Sbjct: 2   SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42


>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
          Length = 245

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 368 KRTRVLKRSFLRFAGSFRSFALNFSKL 288
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 100 KNTKELQ-TFLGFASYYRSFVKNFSKV 125


>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2028

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 368 KRTRVLKRSFLRFAGSFRSFALNFSKL 288
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 598 KNTKELQ-TFLGFASYYRSFVKNFSKV 623


>SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)
          Length = 366

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 368 KRTRVLKRSFLRFAGSFRSFALNFSKL 288
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 61  KNTKELQ-TFLGFASYYRSFVKNFSKV 86


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 238 EGCKLYHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGK 393
           E  ++  + P+  T   +    SAK+ +   KRKK R + R R   ++KS K
Sbjct: 336 ESVRMQEVSPSSETSRRTVSGHSAKEDRTSKKRKKARKHKRKRKHSKHKSEK 387


>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
          Length = 383

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 295 EKFSAKDLKDPAKRKKLRFNTRVRFE---ERYKSGKNKWFFQKLR 420
           ++ S  D +D +KRK++RF     FE   + YK+      FQK R
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRVKNITFQKDR 281


>SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -2

Query: 165 LSIPATKACPYGLSEVPSS*FLTTIALRP--AYRPLKTSTTLPGFIILPILEGY 10
           +S+ A+ + PY    +P+S FL ++   P   Y+PL      P  + L     Y
Sbjct: 13  VSLQASASYPYKPPRIPTSLFLVSLQAPPLYTYKPLPRIPASPSLVFLQAPPSY 66


>SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 368 KRTRVLKRSFLRFAGSFRSFALNFSKL 288
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 61  KNTKELQ-TFLGFASYYRSFVENFSKV 86


>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
          Length = 1205

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 368 KRTRVLKRSFLRFAGSFRSFALNFSKL 288
           K T+ L+ +FL FA  +RSF  NFSK+
Sbjct: 677 KNTKELQ-TFLGFASYYRSFVENFSKV 702


>SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)
          Length = 105

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 8   EYPS-KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 112
           ++P+ ++GK  K G  V V+ GRY G   ++V+  D
Sbjct: 58  DFPAHELGKHFKMGDHVKVIGGRYEGDTGLIVRVED 93


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 304 SAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 420
           SAK+L++  +RK+  +NT    E RY+  K K   Q  R
Sbjct: 562 SAKELEEELERKREDYNTAAD-ERRYQMAKKKDTLQATR 599


>SB_17268| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.7)
          Length = 434

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 372 REVQKWEEQVVLPEA*VLSVILKENKRYVSYEIKKKKK 485
           +E+QKW+E V         +I KE K+  +YE   K+K
Sbjct: 108 KEMQKWQESVRYQTELEKQLIEKEKKKQQAYEEFLKEK 145


>SB_12072| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 1693

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 21/84 (25%), Positives = 35/84 (41%)
 Frame = +1

Query: 172 PESAQEDGKE*NPQEVQDKAFREGCKLYHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLRF 351
           P SA   GK+ +         R+ C  Y ++    +   S EK S        K  +  +
Sbjct: 531 PRSADAPGKKSSMSTSTSPMMRKSC--YAILDMSNSPHHSHEKLSRTPTYGVFKTYEELY 588

Query: 352 NTRVRFEERYKSGKNKWFFQKLRF 423
            ++V+ E+R + G      +KLRF
Sbjct: 589 LSKVKREDRLEQGIQSENMRKLRF 612


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,628
Number of Sequences: 59808
Number of extensions: 304013
Number of successful extensions: 903
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)