Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30151
         (487 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal prote...   124   3e-29
AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal pro...   124   3e-29
U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    29   1.4  
Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical pr...    27   5.5  
U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    27   7.2  
U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    27   9.5  
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    27   9.5  
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    27   9.5  
AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical...    27   9.5  

>U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal protein
           L27 homolog protein.
          Length = 136

 Score =  124 bits (299), Expect = 3e-29
 Identities = 57/77 (74%), Positives = 65/77 (84%)
 Frame = +2

Query: 23  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 202
           MGKIMKPGKVVLVL G+YAGRKA+VVK  DEG SD+ Y HA +AGIDRYP KV K MGK 
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60

Query: 203 KIHKRSKIKPFVKVVNY 253
           KI KR+K+KPF+KVV+Y
Sbjct: 61  KIEKRNKLKPFLKVVSY 77



 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
 Frame = +1

Query: 169 PPESAQEDGKE*NPQEVQDKAFREGCKLYHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 342
           P +  ++ GK+   +  + K F +     HL+PTRY+VD +F+K   + + LK P+K++K
Sbjct: 50  PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109

Query: 343 LRFNTRVRFEERYKSGKNKWFFQKLRF 423
                + +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136


>AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 27 protein.
          Length = 136

 Score =  124 bits (299), Expect = 3e-29
 Identities = 57/77 (74%), Positives = 65/77 (84%)
 Frame = +2

Query: 23  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 202
           MGKIMKPGKVVLVL G+YAGRKA+VVK  DEG SD+ Y HA +AGIDRYP KV K MGK 
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60

Query: 203 KIHKRSKIKPFVKVVNY 253
           KI KR+K+KPF+KVV+Y
Sbjct: 61  KIEKRNKLKPFLKVVSY 77



 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 37/87 (42%), Positives = 56/87 (64%), Gaps = 2/87 (2%)
 Frame = +1

Query: 169 PPESAQEDGKE*NPQEVQDKAFREGCKLYHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 342
           P +  ++ GK+   +  + K F +     HL+PTRY+VD +F+K   + + LK P+K++K
Sbjct: 50  PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109

Query: 343 LRFNTRVRFEERYKSGKNKWFFQKLRF 423
                + +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136


>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 29  KIMKPGKVVLVLSGRYAGRKAIVVK 103
           K + PG V++VL+GR+ G++ + +K
Sbjct: 69  KTLTPGTVLIVLAGRHKGKRVVFLK 93


>Z81540-9|CAD89742.1|  740|Caenorhabditis elegans Hypothetical
           protein F46B3.17 protein.
          Length = 740

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 89  PCDPRTGHLRPALLYPASLSYPS 21
           P D  TGH RPAL  P     PS
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS 572


>U67956-1|AAB07690.2|  157|Caenorhabditis elegans Hypothetical
           protein F16F9.1 protein.
          Length = 157

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 300 FFKAEVNCITCWHQVI*FTTFTKGFILDLLWILFFPILLCTF 175
           F   E  C +C   V    T  K  I  L WI+F  +L+C F
Sbjct: 86  FASYETTCYSCGKYV---HTLPKFVIGSLTWIVFILVLICFF 124


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 208 PQEVQDKAFREGCKLYHLMPTRYTVDFSFEKFSAKDLKDP 327
           PQ+ Q  ++  G + YH  P  Y   F +  + A   + P
Sbjct: 190 PQQRQQHSYNAGPRTYHEEPQPYPAKFEYVDYPAPTTRRP 229


>U42848-3|AAA83609.1|  693|Caenorhabditis elegans Hypothetical
           protein C31H1.1 protein.
          Length = 693

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 281 LTSALKNSAQKT*KTLQNVRSCVSTREYVLK 373
           L  AL+NSAQK    L ++ + VST  Y L+
Sbjct: 651 LFDALQNSAQKCGVALSDLMTAVSTSSYSLE 681


>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 371  SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 276
            S+ T V + +SFL   G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 371  SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 276
            S+ T V + +SFL   G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 371  SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV 276
            S+ T V + +SFL   G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196


>AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical
           protein Y53F4B.12 protein.
          Length = 721

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = -2

Query: 372 FKTYSRVETQLLTFCRVFQVFCAEFFKAEVNCITCWHQVI*FTTFTKGFILDL 214
           F T+ R    L  FC V   F A      V  +TCW   I F      F +++
Sbjct: 568 FATFHRSRRLLFLFCVVTCAFSAFLRNYAVPTVTCWMLSIGFVLVIVVFTVNI 620


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,818,371
Number of Sequences: 27780
Number of extensions: 220492
Number of successful extensions: 743
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)