Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30151
(487 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 97 7e-21
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 94 4e-20
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 94 5e-20
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 33 0.077
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 33 0.13
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 33 0.13
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 30 0.72
At4g34630.1 68417.m04918 expressed protein 29 1.7
At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)... 28 3.8
At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)... 28 3.8
At3g23320.1 68416.m02941 hypothetical protein 27 8.9
>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)
Length = 135
Score = 96.7 bits (230), Expect = 7e-21
Identities = 43/85 (50%), Positives = 61/85 (71%)
Frame = +2
Query: 23 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 202
M K MKPGK V++L GRY G+KA++VK++D+GT +K YGH VAG+ +YP KV ++
Sbjct: 1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 203 KIHKRSKIKPFVKVVNYIT*CQHVI 277
K K+S++K F KV+NY QHV+
Sbjct: 61 KTAKKSRVKCFFKVINY----QHVM 81
Score = 63.7 bits (148), Expect = 6e-11
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Frame = +1
Query: 142 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKLYHLMPTRYTVDFSFEKF-SAKDL 318
C ++ P + ++D + ++ + K F + H+MPTRYT+D + SA +
Sbjct: 41 CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAI 100
Query: 319 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 423
K+ + +FEER+K+GKN+WFF KLRF
Sbjct: 101 SSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135
>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
tuberosum]
Length = 135
Score = 94.3 bits (224), Expect = 4e-20
Identities = 38/77 (49%), Positives = 58/77 (75%)
Frame = +2
Query: 23 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 202
M K +K K V++L GRYAG+KA+++K++D+GTSD+ YGH VAG+ +YP KV ++
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 203 KIHKRSKIKPFVKVVNY 253
K K+S++K F+K+VNY
Sbjct: 61 KTAKKSRVKCFIKLVNY 77
Score = 64.9 bits (151), Expect = 3e-11
Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +1
Query: 142 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKLYHLMPTRYTVDFSFEKFSAKD-L 318
C ++ P + ++D + ++ + K F + HLMPTRYT+D ++ + D L
Sbjct: 41 CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDAL 100
Query: 319 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 423
K K+ + + EER+K+GKN+WFF KLRF
Sbjct: 101 KSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135
>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
Length = 135
Score = 93.9 bits (223), Expect = 5e-20
Identities = 37/77 (48%), Positives = 57/77 (74%)
Frame = +2
Query: 23 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 202
M K +K K V++L GRYAG+KA+++K++D+G D+PYGH VAG+ +YP KV ++
Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60
Query: 203 KIHKRSKIKPFVKVVNY 253
K K+S++K F+K+VNY
Sbjct: 61 KTAKKSRVKCFIKLVNY 77
Score = 63.3 bits (147), Expect = 8e-11
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +1
Query: 142 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKLYHLMPTRYTVDFSFEKFSAKD-L 318
C ++ P + ++D + ++ + K F + HLMPTRYT+D ++ + D L
Sbjct: 41 CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDAL 100
Query: 319 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 423
+ K+ + + EER+K+GKN+WFF KLRF
Sbjct: 101 QSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 33.5 bits (73), Expect = 0.077
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 14 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 118
P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 82 PTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 32.7 bits (71), Expect = 0.13
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 14 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 118
P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 82 PAKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 32.7 bits (71), Expect = 0.13
Identities = 11/35 (31%), Positives = 23/35 (65%)
Frame = +2
Query: 14 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 118
P+K+ + PG V+++L+GR+ G++ + +K G
Sbjct: 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 30.3 bits (65), Expect = 0.72
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 349 FNTRVRFEERYKSGKNKWFF 408
+N R + E+RYKS K KWF+
Sbjct: 58 YNKRNKKEQRYKSPKGKWFY 77
>At4g34630.1 68417.m04918 expressed protein
Length = 199
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +2
Query: 110 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 223
D+G D+ Y ++ + PR V K++G+ ++ K K
Sbjct: 130 DDGEEDREYDDSYDLDEELVPRSVSKKVGRQRMRKLGK 167
>At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)
identical to transcription factor (TGA1) GI:16550 from
[Arabidopsis thaliana]
Length = 368
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 95 VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNK-IHKRSKIKPFVKVVNYIT*CQH 271
V ++ GT+ P+ A R+P K+ +R+ +N+ ++S+++ V T
Sbjct: 57 VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 116
Query: 272 VIQLTSALKNSAQK 313
+IQL L + Q+
Sbjct: 117 LIQLEQELDRARQQ 130
>At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)
identical to transcription factor (TGA1) GI:16550 from
[Arabidopsis thaliana]
Length = 368
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Frame = +2
Query: 95 VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNK-IHKRSKIKPFVKVVNYIT*CQH 271
V ++ GT+ P+ A R+P K+ +R+ +N+ ++S+++ V T
Sbjct: 57 VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 116
Query: 272 VIQLTSALKNSAQK 313
+IQL L + Q+
Sbjct: 117 LIQLEQELDRARQQ 130
>At3g23320.1 68416.m02941 hypothetical protein
Length = 191
Score = 26.6 bits (56), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 34 NEAG*SSAGLKWPVRGSQG 90
N AG +GL+W +R SQG
Sbjct: 46 NHAGRQDSGLRWIIRNSQG 64
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,294,903
Number of Sequences: 28952
Number of extensions: 211038
Number of successful extensions: 643
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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