Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30150
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 161 1e-40
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 66 4e-12
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 65 1e-11
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 60 3e-10
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 59 6e-10
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 58 1e-09
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 57 2e-09
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 57 3e-09
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 54 3e-08
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 53 5e-08
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 52 7e-08
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 51 2e-07
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 49 6e-07
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 49 6e-07
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 48 2e-06
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 46 6e-06
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 37 0.004
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 33 0.060
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 29 0.56
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 29 0.56
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 29 0.74
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 29 0.74
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 28 1.7
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc... 28 1.7
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 28 1.7
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 27 2.3
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 27 4.0
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 27 4.0
SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces p... 26 5.2
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 26 6.9
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 26 6.9
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 25 9.2
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|... 25 9.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.2
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 25 9.2
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 161 bits (390), Expect = 1e-40
Identities = 72/88 (81%), Positives = 77/88 (87%)
Frame = +1
Query: 256 NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEG 435
N G I FNVWDTAGQEK GGLRDGYYIQGQC IIMFDVTSR+TYKNVP+W RDLVRVCE
Sbjct: 54 NFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCEN 113
Query: 436 IPIVLCGNKVDIKDRKVKAKTIVFPGKR 519
IPIVLCGNKVD+K+RKVKAK I F K+
Sbjct: 114 IPIVLCGNKVDVKERKVKAKAITFHRKK 141
Score = 114 bits (275), Expect = 1e-26
Identities = 52/77 (67%), Positives = 62/77 (80%)
Frame = +3
Query: 504 FPRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQI 683
F RKKNLQYYDISAKSNYNFEKPFLWLARKL+G+ NLEFVA PAL PPEV +D Q Q
Sbjct: 137 FHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPNLEFVASPALAPPEVQVDQQLLAQY 196
Query: 684 EKDLQDAQNTALPEEDE 734
++++ +A LP+ED+
Sbjct: 197 QQEMNEAAAMPLPDEDD 213
Score = 97.5 bits (232), Expect = 2e-21
Identities = 43/52 (82%), Positives = 47/52 (90%)
Frame = +2
Query: 113 DMPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHRTAGQ 268
++PTFK VLVGDGGTGKTTFVKRHLTGEFEKKY+ATLGVEVHPL FH G+
Sbjct: 6 NVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGE 57
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 66.5 bits (155), Expect = 4e-12
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-EGIPI 444
++ +WDTAGQE++ L YY CAI+++D+T + + +W ++L R EGI I
Sbjct: 64 VKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVI 123
Query: 445 VLCGNKVDIKDRK 483
L GNK+D+ +
Sbjct: 124 ALAGNKLDLAQER 136
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 128 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 226
K VL+GD GK++ V R + +F+ +T+G
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIG 48
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 64.9 bits (151), Expect = 1e-11
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCEGIPI 444
++ +WDTAGQE+F + YY II++DVT + ++ NV W +++ R EG+
Sbjct: 57 VKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNR 116
Query: 445 VLCGNKVDIKDRKV 486
+L GNK D+ D+KV
Sbjct: 117 LLVGNKSDMVDKKV 130
Score = 35.9 bits (79), Expect = 0.006
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 125 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 232
FK +L+GD G GK+ + R + + Y++T+GV+
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVD 44
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 60.5 bits (140), Expect = 3e-10
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEG--IP 441
+R +WDTAGQE+F L Y AII++D+T+ ++ N W D VR G +
Sbjct: 60 VRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIED-VRAERGDDVI 118
Query: 442 IVLCGNKVDIKDRK 483
IVL GNK D+ D++
Sbjct: 119 IVLVGNKTDLADKR 132
Score = 35.9 bits (79), Expect = 0.006
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 125 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 232
FK V +G+ GKT+ + R + +F+ Y AT+G++
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGID 47
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 59.3 bits (137), Expect = 6e-10
Identities = 29/101 (28%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Frame = +1
Query: 184 FDWRVREKIRCDSGCRSTSSSIP*NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF 363
+D +V + D R S + + I+ +WDTAGQEKF + YY A++++
Sbjct: 34 WDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVY 93
Query: 364 DVTSRVTYKNVPNWHRDLVRVCEG-IPIVLCGNKVDIKDRK 483
DVT++ +++ + +W D+ + I +VL G+K D+++++
Sbjct: 94 DVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQR 134
Score = 29.1 bits (62), Expect = 0.74
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 128 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 232
K VL G GTGK+ ++R + +++ + T+G++
Sbjct: 11 KIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGID 45
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 58.0 bits (134), Expect = 1e-09
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----E 432
+ +WDTAGQE+F L +Y C ++++DV + +++ + +W + L++ E
Sbjct: 57 VTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPE 116
Query: 433 GIPIVLCGNKVDIKDRK---VKAKTIVF 507
P +L GNKVD++++K K+K + F
Sbjct: 117 TFPFILLGNKVDVEEQKRMVSKSKALAF 144
Score = 35.9 bits (79), Expect = 0.006
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 128 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 232
K +++G+ G GKT+ + +++ +F K Y AT+G +
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGAD 44
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCEGIPI 444
I+ +WDTAGQE+F + YY ++++DVT + ++ NV W ++ + E +
Sbjct: 58 IKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYK 117
Query: 445 VLCGNKVDIKDRK 483
+L GNK D +D++
Sbjct: 118 ILIGNKCDCEDQR 130
Score = 31.5 bits (68), Expect = 0.14
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +2
Query: 128 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 232
K +L+GD G GK+ + R F ++ T+G++
Sbjct: 11 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGID 45
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 474 RQKS*GENYCFPRKKNLQYYDISAKSNYNFEKPFLWLARKL 596
RQ S + + +++ + SAK+N N ++ F LAR++
Sbjct: 130 RQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 56.8 bits (131), Expect = 3e-09
Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-GIPI 444
I+ +WDTAGQE++ + YY A+I++D+T + ++ NV W ++L + I I
Sbjct: 59 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVI 118
Query: 445 VLCGNKVDI 471
+L GNK D+
Sbjct: 119 MLVGNKTDL 127
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +2
Query: 125 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 232
FK VL+GD G GK+ + R EF + +T+GVE
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVE 46
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 53.6 bits (123), Expect = 3e-08
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +1
Query: 265 PIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCEGIP 441
P ++DTAGQE + LR Y Q ++ F VTS +++NV W ++ C G+P
Sbjct: 50 PYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVP 109
Query: 442 IVLCGNKVDIKD 477
++ G ++D++D
Sbjct: 110 CLIVGTQIDLRD 121
Score = 43.2 bits (97), Expect = 4e-05
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +2
Query: 116 MPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 223
MPT KCV+VGDG GKT + + T +F YV T+
Sbjct: 1 MPTIKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTV 36
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 52.8 bits (121), Expect = 5e-08
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE----G 435
+ +WDTAGQE+F L +Y C +I+++V + ++ +V NW ++ +
Sbjct: 57 VTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECA 116
Query: 436 IPIVLCGNKVDIKDRKVKAKTI 501
P ++ GN++D KD +A ++
Sbjct: 117 FPFIIVGNQID-KDASKRAVSL 137
Score = 35.5 bits (78), Expect = 0.009
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 128 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE 232
K V++GD G GKT + + + +F ++Y AT+G +
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGAD 44
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 52.4 bits (120), Expect = 7e-08
Identities = 22/75 (29%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Frame = +1
Query: 277 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRV--CEGIPIVL 450
+V DTAGQE++ +R+ Y G+ ++++++TSR ++ + +++ ++RV + P+VL
Sbjct: 59 DVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVL 118
Query: 451 CGNKVDIKDRKVKAK 495
NK D++ +V ++
Sbjct: 119 VANKCDLEAERVVSR 133
Score = 29.1 bits (62), Expect = 0.74
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 125 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 223
+K V+VGDGG GK+ + + F +Y T+
Sbjct: 9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTI 41
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCEGIPI 444
I +WDTAGQE + LR Y +I F V + + NV W +++ C +PI
Sbjct: 54 IELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPI 113
Query: 445 VLCGNKVDIKD 477
+L G KVD+++
Sbjct: 114 LLVGCKVDLRN 124
Score = 29.1 bits (62), Expect = 0.74
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 128 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 223
K V+VGDG GKT + G F + YV T+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV 39
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 49.2 bits (112), Expect = 6e-07
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Frame = +1
Query: 256 NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCE 432
N I +WDTAGQE++ LR Y ++ F + + NV W+ ++ C
Sbjct: 60 NSKVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCP 119
Query: 433 GIPIVLCGNKVDI-KDR 480
PIVL G K D+ KDR
Sbjct: 120 RTPIVLVGLKADLRKDR 136
Score = 33.5 bits (73), Expect = 0.035
Identities = 15/32 (46%), Positives = 21/32 (65%)
Frame = +2
Query: 128 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 223
K V+VGDGG GKT + +G F ++YV T+
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTV 47
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 49.2 bits (112), Expect = 6e-07
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCEGIPI 444
++ +WDTAGQE++ LR Y + ++ F + S + +NV W ++ +C +P
Sbjct: 56 VQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPNVPF 115
Query: 445 VLCGNKVDIKDRKV 486
+L G K D++ V
Sbjct: 116 ILVGMKADLRSDPV 129
Score = 31.1 bits (67), Expect = 0.18
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 128 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 223
K V+VGDG GKT+ + G F +YV T+
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTV 41
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 47.6 bits (108), Expect = 2e-06
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCEGIPI 444
I ++WDTAGQE++ LR Y +I F V SR + +NV W ++ C G+ +
Sbjct: 61 IELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPGVKL 120
Query: 445 VLCGNKVDIK 474
VL K D++
Sbjct: 121 VLVALKCDLR 130
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 128 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 223
K V++GDG GKT+ + G F + Y T+
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTI 46
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 46.0 bits (104), Expect = 6e-06
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCEGIPI 444
+ +WDTAGQE + LR Y +I F V S + NV W +++ C +PI
Sbjct: 54 VELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSSLPI 113
Query: 445 VLCGNKVDIKD 477
+L K D+++
Sbjct: 114 LLVACKADLRN 124
Score = 29.1 bits (62), Expect = 0.74
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 128 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 223
K V+VGDG GKT + G F + YV T+
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV 39
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEGIPIV 447
I F++WD GQ +F + + MFD++ + T ++ W+R + +
Sbjct: 59 ITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPI 118
Query: 448 LCGNKVD 468
L G K D
Sbjct: 119 LIGTKYD 125
Score = 32.7 bits (71), Expect = 0.060
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 122 TFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGV 229
T K ++GD GKT+ + ++ G F+++ TLGV
Sbjct: 10 TIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGV 45
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 32.7 bits (71), Expect = 0.060
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Frame = +1
Query: 286 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVR--VCEGIPIVLCGN 459
DTAGQ+++ L + I ++++ +TS+ +++ V ++ E +PIV+ GN
Sbjct: 60 DTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGN 119
Query: 460 KVDI 471
K D+
Sbjct: 120 KSDL 123
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 29.5 bits (63), Expect = 0.56
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = +1
Query: 367 VTSRVTYKNVPNWHRDLVRVCEGIPIVLCGNKVDIKDRKVKAKTIVFPGKRIC 525
++ +Y+ VPN H++ + C + N++ I D++ K K R+C
Sbjct: 28 ISKSCSYQKVPNSHKEFTKFCYEV-----YNEIKISDKEFKEKRAALDTLRLC 75
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 29.5 bits (63), Expect = 0.56
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRV 426
I F VWD GQ+K L Y+ Q I + D R + + H +L R+
Sbjct: 61 ISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDR---ERISEAHEELQRM 110
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.1 bits (62), Expect = 0.74
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = +1
Query: 262 GPIRFNVWDTAGQEKF-----GGLRDGYYIQGQCAIIMFDVTSR 378
G + N+WD GQE F RD + Q I +FDV SR
Sbjct: 49 GNLVLNLWDCGGQEAFMENYLSAQRDHIFRNVQVLIYVFDVESR 92
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 29.1 bits (62), Expect = 0.74
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 268 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 366
I+FNVWD GQ+K L Y+ + I + D
Sbjct: 65 IKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVD 97
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +2
Query: 134 VLVGDGGTGKTTFVK 178
VL+G+ GTGKTTF K
Sbjct: 379 VLLGENGTGKTTFCK 393
>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 273
Score = 27.9 bits (59), Expect = 1.7
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +2
Query: 185 LTGEFEKKYVATLGVEVHPLVFHRTAGQFVLMCGTQPDKRSLVVLETDTIFKDNVLS 355
LT K + L E+ + FH T G+F + C + D + + F N+ S
Sbjct: 155 LTTHENKSFTLKLANELEFIFFHDTRGKFSVYCSSSKDDAITFSINRNNNFLGNLWS 211
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 621 VAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDED 737
+++P PP D + +E+D++D AL EDE+
Sbjct: 29 LSLPPSSPPPEFSDEAAEALVEEDIEDLDGEALDVEDEE 67
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 372 GYVEHDDSTLSLNIVSVSKTTKLLLSGCVPHIKTNW 265
G ++ D T + I+S + T + GC P+ KTNW
Sbjct: 393 GEPQNVDETRASEILSQDELTVDVDLGCGPYAKTNW 428
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +2
Query: 134 VLVGDGGTGKTTFVKR---HLTGEFEKKYVATLGVEVHPLVF 250
++VG G+GKTTF+++ HL + + Y+ L V L +
Sbjct: 12 IVVGMAGSGKTTFMQQLNAHLHSKNKPPYILNLDPAVRNLPY 53
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/69 (26%), Positives = 26/69 (37%)
Frame = -3
Query: 360 HDDSTLSLNIVSVSKTTKLLLSGCVPHIKTNWPAVLWNTRGCTSTPRVATYFFSNSPVKC 181
H D +L+ S +T L SG W LW + + SN PV+
Sbjct: 190 HLDWVRTLSFKKTSGSTATLASGSQDRYIRLWNISLWGSEDEKVSEEFFESVLSNKPVRF 249
Query: 180 LLTKVVLPV 154
L K+ L +
Sbjct: 250 TLGKIDLKI 258
>SPAC2F7.17 |||peptide chain release factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 396
Score = 26.2 bits (55), Expect = 5.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 651 VTMDPQWQNQIEKDLQDAQNTALPEED 731
VT + N+I K ++D +NT LP+ D
Sbjct: 112 VTEINEISNKIPKSIEDLENTLLPQAD 138
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +2
Query: 413 IWSVYVKVSLLSCAETKWILKT-EKLRRKLLFSQEKEFAV 529
+W ++ V LS A +I T E+L+R +LF + + FAV
Sbjct: 838 VWDIFFGV--LSGAWQNYIANTSERLKRSMLFIENQLFAV 875
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -3
Query: 432 FTYTDQISMPVRYIF-VRNSRGYVEHDDSTLSLNIVSVSKTTKLLLSGCV 286
+ YTD + +F V + +EH+ + L ++ SK +L+ CV
Sbjct: 177 YFYTDASPLKTPLVFPVPENNKEIEHEVVSEILELIEKSKNPSILVDACV 226
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 322 DGYYIQGQCAIIMFDVTSRVTYKNVP 399
D Y G+C+ M +++ V YKN P
Sbjct: 53 DSRYADGRCSAAMRSLSNYVLYKNNP 78
>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 519 NLQYYDISAKSNYNFEKPFLWL 584
N+ Y +I++K NY+ + + WL
Sbjct: 244 NMPYIEITSKHNYDIDFKYKWL 265
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +2
Query: 131 CVLVGDGGTGKTTFVK 178
C+LVGD TGKT ++
Sbjct: 1872 CILVGDTATGKTCILR 1887
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 38 LERVKSRFSYTIXXXXXXXXXXMADDMPT-FKCVLVGDGGTGKTTFVK 178
+E S SYT + D+P + +LVG G GK+T +K
Sbjct: 1 MEVTVSNLSYTFSPKQPLSLDHVTLDLPKGSRTLLVGANGAGKSTLLK 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,493,261
Number of Sequences: 5004
Number of extensions: 77363
Number of successful extensions: 345
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -