Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30150
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.2  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.5  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 232  STSSSIP*NRGPIRFNVWDTAGQEKFGGLRD 324
            +TS ++P N GP R NV      E+   L D
Sbjct: 1067 NTSLALPKNEGPFRLNVETAKTNEEMWELID 1097


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 223 GCRSTSSSIP*NRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAI 354
           G   T  ++P   GPIR  + D +     GGL D   ++ + A+
Sbjct: 437 GSMPTMPTMPSMAGPIRRRISDKSALSLAGGLYDEGTVRRRVAV 480


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 660 DPQWQNQIEKDLQDA 704
           + +W+N+ E D QDA
Sbjct: 343 EEEWENENESDYQDA 357


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 397 PNWHRDLVRVCEGIPIVLCGNKVDIKDRKVKAKTIVFPGKRIC 525
           PNW  + V+ C+G+  V    +VD   R     T +   K+IC
Sbjct: 107 PNWSYNDVKYCDGLTSVY-RMQVDKCGRLWILDTGILGEKQIC 148


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = -3

Query: 507 ENNSFRLNFSVFNIHFVSAQDNRDTFTYTDQISMPVRYIFVRNSRGYVEHDDSTLSLNIV 328
           E N +  N  + N+ F   Q      T T Q +M +  +   +S+  V  DD+     ++
Sbjct: 362 EMNKWWWNMKISNLSF-DKQSLLKENTVTCQEAMHM--LKNADSQLLVISDDNIHIKGVI 418

Query: 327 SVSKTTKLLLSGCV 286
           S++K T  ++SG V
Sbjct: 419 SLNKLTSYVISGIV 432


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/29 (20%), Positives = 18/29 (62%)
 Frame = +1

Query: 388 KNVPNWHRDLVRVCEGIPIVLCGNKVDIK 474
           K++ +W  ++  + +G P++   N +D++
Sbjct: 379 KSLEDWENEMNIITKGKPLIRVENIIDLE 407


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,794
Number of Sequences: 438
Number of extensions: 5346
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)