Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30149
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 131 3e-31
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 130 1e-30
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 111 3e-25
03_06_0569 + 34789286-34790052,34791216-34791512,34791604-347918... 29 2.7
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 6.3
03_06_0500 - 34361139-34362006,34362295-34362818,34362908-343631... 27 8.4
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 27 8.4
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 131 bits (317), Expect = 3e-31
Identities = 61/90 (67%), Positives = 73/90 (81%)
Frame = +1
Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 426
G T+D R+Y++P M VAAL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 91 GTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPK 150
Query: 427 NAREAVRHFGPAPGAPRSHTKPYVRTKDMK 516
NAREAV+HFGPAPG P S+TKPYVR+K K
Sbjct: 151 NAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180
Score = 57.6 bits (133), Expect = 7e-09
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 7/91 (7%)
Frame = +2
Query: 2 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 178
GID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRPP 61
Query: 179 ISVSRLARHM--KKPTXEGL----IAVVVGT 253
+S+ RL R M K P + IAV+VGT
Sbjct: 62 LSMRRLVRFMEGKVPDRHAISGDQIAVIVGT 92
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 130 bits (313), Expect = 1e-30
Identities = 62/90 (68%), Positives = 71/90 (78%)
Frame = +1
Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 426
G T+D R+ +IPKM V AL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 84 GTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPK 143
Query: 427 NAREAVRHFGPAPGAPRSHTKPYVRTKDMK 516
NAREAVRHFG APG P SHTKPYVR+K K
Sbjct: 144 NAREAVRHFGKAPGVPHSHTKPYVRSKGRK 173
Score = 60.9 bits (141), Expect = 7e-10
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 178
GID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRPP 61
Query: 179 ISVSRLARHMKKPTXEGLIAVVVGT 253
+S+ RLA+ M + E IAV+VGT
Sbjct: 62 LSLRRLAKFM-EGKEENNIAVIVGT 85
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 111 bits (268), Expect = 3e-25
Identities = 60/107 (56%), Positives = 72/107 (67%), Gaps = 17/107 (15%)
Frame = +1
Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT------- 405
G T+D R+Y++P M VAAL TE ARARI+ GGE LTFDQLALRAP G+ T
Sbjct: 83 GTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEI 142
Query: 406 ----------VLVQGQRNAREAVRHFGPAPGAPRSHTKPYVRTKDMK 516
VL++G +NAREAV+HFGPAPG P S+TKPYVR+K K
Sbjct: 143 LTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 189
Score = 62.5 bits (145), Expect = 2e-10
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 178
GID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRPP
Sbjct: 2 GIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRPP 61
Query: 179 ISVSRLARHMKKPTXEGLIAVVVGT 253
+S+ RL R M+ E IAV+VGT
Sbjct: 62 LSLRRLVRFME--GKENQIAVIVGT 84
>03_06_0569 +
34789286-34790052,34791216-34791512,34791604-34791835,
34792334-34792391,34792800-34792931,34793108-34793246,
34793460-34793622,34793693-34793734
Length = 609
Score = 29.1 bits (62), Expect = 2.7
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Frame = -3
Query: 334 CVHELFR*HEEQPPSSSVSCTVSRHLCCPH-----YHGNQTLXSWLLHVARQTRHRDW-- 176
C+HE + E+ S C ++ CC H ++ N+T S L W
Sbjct: 458 CLHERYNQAHEKEYGKSNLCGLALATCCHHLCQWNHYANKTFLSGLGITEEDFHTMTWFS 517
Query: 175 -WPVDTAHKEP 146
W VD H P
Sbjct: 518 SWAVDGDHSSP 528
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 359 LLLISWLFVLRLARRQYWYKVSEML 433
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>03_06_0500 -
34361139-34362006,34362295-34362818,34362908-34363125,
34363259-34363406
Length = 585
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = -1
Query: 516 FHVLGANIGFSVRARCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQ 337
F ++G GF++ + +V + S+ + LY + A SQLI + + +S
Sbjct: 455 FLLMGIGDGFALVGLQEYFYDQVPDSMRSLGIGLYLSVIGAGSFLSSQLITAVDRVTSHG 514
Query: 336 NACTSFFG-NMKSSHRHLRY 280
A +FG ++ SS L Y
Sbjct: 515 GAAAGWFGKDLNSSRLDLFY 534
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +3
Query: 384 CSDWQEDSTGTRSAKCS*GSASLWPCSRSTALSH*TLCSHQGH 512
CS E + G +C G W C +T L+H S GH
Sbjct: 365 CSKPIEKNGGCNHVRCKCGQCLCWLCGAATGLAH-NWTSIDGH 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,921,696
Number of Sequences: 37544
Number of extensions: 375208
Number of successful extensions: 1059
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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