Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30149
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              106   2e-23
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.70 
SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   8.6  
SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   8.6  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  106 bits (254), Expect = 2e-23
 Identities = 51/84 (60%), Positives = 61/84 (72%)
 Frame = +1

Query: 235 CRGSGDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLV 414
           C   G  T+D R++++P + + AL  +E ARARIL AGGEILTFDQLALRAP G+ TVL+
Sbjct: 187 CVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNTVLL 246

Query: 415 QGQRNAREAVRHFGPAPGAPRSHT 486
           QG R AREA RH G APG P S T
Sbjct: 247 QGPRKAREAERHMGLAPGVPHSDT 270



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 39/84 (46%), Positives = 49/84 (58%)
 Frame = +2

Query: 2   GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 181
           GIDI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+
Sbjct: 109 GIDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPL 168

Query: 182 SVSRLARHMKKPTXEGLIAVVVGT 253
           S++RL R MK    +  I VVVG+
Sbjct: 169 SLARLVRKMKASGHKDKICVVVGS 192


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 390 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 280
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_48685| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 383 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRT*KSK 523
           V+R   R+ W K  +++V  CV LA++     L +  +F  R  +S+
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRRAPRSR 80


>SB_24186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 246

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +2

Query: 383 VLRLARRQYWYKVSEMLVRQCVTLALLQEHRALTLNPMFAPRT*KSK 523
           V+R   R+ W K  +++V  CV LA++     L +  +F  R  +S+
Sbjct: 34  VIRNVHREGWQKSRDLIVLNCVLLAVIMLCAMLLIAVIFCRRAPRSR 80


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 349 GEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFGPAPGAPRS 480
           GE+++ D++  +A   +       Q N  EA R F P PG P S
Sbjct: 614 GEMMSDDEMKPKARCKRSQSTPIHQENREEAHRPFTPQPGRPLS 657


>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
 Frame = -1

Query: 474 RCSWSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKS-- 301
           RC     + T+  T  +    +  +L+S S+ S    S + SSSS +  +S++ +     
Sbjct: 212 RCQALEHRKTYTTTKTTTANNKIIILSSSSSSSSS-SSSSLSSSSSSPLSSYYHHHHHRR 270

Query: 300 ---SHRHLRYLVQSHVICAVPTTTAI 232
              +H H  Y +  H I  +  TT I
Sbjct: 271 HHLNHYHHHYHLDDHFIFIIIITTLI 296


>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -1

Query: 273 QSHVICAVPTTTAIKPSXVGFFMWRAKRDTEIGGRLIRLIKSRRR 139
           Q   IC+ P   AI+P  V ++  R+K   E+  RL+R+ K R R
Sbjct: 15  QEDRICSNPQGLAIRPPSVLWYTERSK--DEVRKRLLRVAKDRPR 57


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 293 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 412
           RWL ++  + L H  WL   ++L  +SWL+ +R      W
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56


>SB_42| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1207

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 337 LAAGGEILTFDQLALRAPTGKKTVLVQGQRNAREAVRHFG 456
           LA  G   T        PT  +T+ + GQ   R A+R FG
Sbjct: 856 LATSGNTSTTISDNTATPTSSRTMQIPGQTQGRVALREFG 895


>SB_41995| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 785

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 247 HYHGNQTLXSWLLHVARQTRHRDWW 173
           HYH N+ L  +L  ++R      WW
Sbjct: 342 HYHSNEVLKDYLEMLSRTGPRHGWW 366


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 468  SWSRAKVTHCLTSISLTLYQY 406
            +W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,183,188
Number of Sequences: 59808
Number of extensions: 406295
Number of successful extensions: 1100
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)