BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30149 (588 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL021492-6|CAA16387.1| 188|Caenorhabditis elegans Hypothetical ... 136 8e-33 U40415-6|AAP68933.1| 329|Caenorhabditis elegans Homolog of yeas... 29 3.2 U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian ... 28 5.7 U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 28 5.7 U23452-8|AAR12973.1| 231|Caenorhabditis elegans Hypothetical pr... 27 9.9 U23452-7|AAR12972.1| 366|Caenorhabditis elegans Hypothetical pr... 27 9.9 U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein. 27 9.9 U21732-1|AAA85853.1| 970|Caenorhabditis elegans UNC-44 protein. 27 9.9 U21731-1|AAA85852.1| 985|Caenorhabditis elegans UNC-44 protein. 27 9.9 AL110487-5|CAB54428.1| 237|Caenorhabditis elegans Hypothetical ... 27 9.9 >AL021492-6|CAA16387.1| 188|Caenorhabditis elegans Hypothetical protein Y45F10D.12 protein. Length = 188 Score = 136 bits (330), Expect = 8e-33 Identities = 62/87 (71%), Positives = 74/87 (85%) Frame = +1 Query: 256 TNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRNAR 435 T+D RLY +PK++VAALHVTE ARARILAAGGEI+T DQLAL++P G+ TV +QG R+AR Sbjct: 87 TDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRSAR 146 Query: 436 EAVRHFGPAPGAPRSHTKPYVRTKDMK 516 EA +HFGPAPG P SHTKPYVR+K K Sbjct: 147 EAEKHFGPAPGVPHSHTKPYVRSKGRK 173 Score = 70.9 bits (166), Expect = 6e-13 Identities = 38/84 (45%), Positives = 48/84 (57%) Frame = +2 Query: 2 GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 181 GIDINHKHDR RRT KS++ T KFN IVL+RL MSR NR P+ Sbjct: 2 GIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQPL 61 Query: 182 SVSRLARHMKKPTXEGLIAVVVGT 253 S+++LAR ++K E V + T Sbjct: 62 SLAKLARAVQKAGNENKTVVTLST 85 >U40415-6|AAP68933.1| 329|Caenorhabditis elegans Homolog of yeast longevity geneprotein 2 protein. Length = 329 Score = 28.7 bits (61), Expect = 3.2 Identities = 14/56 (25%), Positives = 26/56 (46%) Frame = +2 Query: 296 WLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYWYKVSEMLVRQCVTLALL 463 W +P + +W+ ++ L+ + L R +W +MLV +TLAL+ Sbjct: 125 WPFHPIPNAVAWYYWIQGGFYIALVFGILFLDAKRSDFW----QMLVHHFITLALI 176 >U38377-2|AAN72421.1| 199|Caenorhabditis elegans Sox (mammalian sry box) familyprotein 2, isoform b protein. Length = 199 Score = 27.9 bits (59), Expect = 5.7 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 124 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDST 258 + +D S+P+ ++P +TN S+ P E++ G D G+ DS+ Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSS 161 >U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry box) familyprotein 2, isoform a protein. Length = 283 Score = 27.9 bits (59), Expect = 5.7 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%) Frame = +1 Query: 124 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GFDCR-GSGDST 258 + +D S+P+ ++P +TN S+ P E++ G D G+ DS+ Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSS 245 >U23452-8|AAR12973.1| 231|Caenorhabditis elegans Hypothetical protein R07G3.7b protein. Length = 231 Score = 27.1 bits (57), Expect = 9.9 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +1 Query: 157 EPYQPATNLCVSFGAPHEEANS*GFDCRGSGDSTNDVRLY 276 +P +P L S H +A F+C+GS DS N +L+ Sbjct: 64 QPPRPKVTLKSSECLGHNDAGVFCFNCKGSFDSYNQFQLH 103 >U23452-7|AAR12972.1| 366|Caenorhabditis elegans Hypothetical protein R07G3.7a protein. Length = 366 Score = 27.1 bits (57), Expect = 9.9 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +1 Query: 157 EPYQPATNLCVSFGAPHEEANS*GFDCRGSGDSTNDVRLY 276 +P +P L S H +A F+C+GS DS N +L+ Sbjct: 199 QPPRPKVTLKSSECLGHNDAGVFCFNCKGSFDSYNQFQLH 238 >U21734-1|AAA85854.1| 1786|Caenorhabditis elegans UNC-44 protein. Length = 1786 Score = 27.1 bits (57), Expect = 9.9 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 433 REAVRHFGPAPGAPRSHTKPYVRTKDMKKQGPV 531 R+A+RHF P A + K VRT+D+ + PV Sbjct: 1601 RDAIRHFEEVPAA--TLVKREVRTEDLVTREPV 1631 >U21732-1|AAA85853.1| 970|Caenorhabditis elegans UNC-44 protein. Length = 970 Score = 27.1 bits (57), Expect = 9.9 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 433 REAVRHFGPAPGAPRSHTKPYVRTKDMKKQGPV 531 R+A+RHF P A + K VRT+D+ + PV Sbjct: 698 RDAIRHFEEVPAA--TLVKREVRTEDLVTREPV 728 >U21731-1|AAA85852.1| 985|Caenorhabditis elegans UNC-44 protein. Length = 985 Score = 27.1 bits (57), Expect = 9.9 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +1 Query: 433 REAVRHFGPAPGAPRSHTKPYVRTKDMKKQGPV 531 R+A+RHF P A + K VRT+D+ + PV Sbjct: 771 RDAIRHFEEVPAA--TLVKREVRTEDLVTREPV 801 >AL110487-5|CAB54428.1| 237|Caenorhabditis elegans Hypothetical protein Y39E4B.6 protein. Length = 237 Score = 27.1 bits (57), Expect = 9.9 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%) Frame = -1 Query: 384 TKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVIC---AVPTTTAI 232 T+SQL T G+ ++ +RHLR L+ +H I V +TTAI Sbjct: 172 TRSQLAAELLERDQDTQVLTRELGSKETENRHLRSLLSAHGISPDEPVTSTTAI 225 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,159,608 Number of Sequences: 27780 Number of extensions: 312615 Number of successful extensions: 826 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 774 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 824 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1237082886 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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