Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30149
(588 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 128 3e-30
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 126 1e-29
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 117 7e-27
At5g28190.1 68418.m03413 hypothetical protein 33 0.19
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 31 0.43
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 0.57
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 29 1.7
At3g28415.1 68416.m03551 P-glycoprotein, putative contains ATP-b... 28 4.0
At3g28390.1 68416.m03547 P-glycoprotein, putative similar to P-g... 28 4.0
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 28 4.0
At1g05440.1 68414.m00552 expressed protein ; expression supporte... 28 4.0
At1g32190.1 68414.m03959 expressed protein 27 7.0
At4g10340.1 68417.m01699 chlorophyll A-B binding protein CP26, c... 27 9.3
At3g28380.1 68416.m03546 P-glycoprotein, putative similar to P-g... 27 9.3
At3g28345.1 68416.m03541 ABC transporter family protein similar ... 27 9.3
At1g31870.1 68414.m03917 expressed protein 27 9.3
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 128 bits (309), Expect = 3e-30
Identities = 59/90 (65%), Positives = 72/90 (80%)
Frame = +1
Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 426
G T+D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 83 GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPK 142
Query: 427 NAREAVRHFGPAPGAPRSHTKPYVRTKDMK 516
N+REAV+HFGPAPG P SH+KPYVR K K
Sbjct: 143 NSREAVKHFGPAPGVPHSHSKPYVRAKGRK 172
Score = 60.5 bits (140), Expect = 8e-10
Identities = 35/85 (41%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 178
GID I +K +RT KS D+ TN+KFN ++L+RLFMS++N+ P
Sbjct: 2 GIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAP 61
Query: 179 ISVSRLARHMKKPTXEGLIAVVVGT 253
+S+SRL M E IAV+VGT
Sbjct: 62 LSLSRLVEFM--TGKEDKIAVLVGT 84
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 126 bits (304), Expect = 1e-29
Identities = 59/90 (65%), Positives = 72/90 (80%)
Frame = +1
Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 426
G T+D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 83 GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPK 142
Query: 427 NAREAVRHFGPAPGAPRSHTKPYVRTKDMK 516
N+REAV+HFGPAPG P S+TKPYVR K K
Sbjct: 143 NSREAVKHFGPAPGVPHSNTKPYVRHKGRK 172
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 178
GID I +K +RT KS D+ +N+ FN ++L+RLFMS++N+ P
Sbjct: 2 GIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAP 61
Query: 179 ISVSRLARHMKKPTXEGLIAVVVGT 253
+S+SRL M + IAV+VGT
Sbjct: 62 LSLSRLVEFM--TGKDDKIAVLVGT 84
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 117 bits (281), Expect = 7e-27
Identities = 57/91 (62%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Frame = +1
Query: 247 GDSTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPT-GKKTVLVQGQ 423
G T+DVR+ +P +TV AL TE ARARI AGGE LTFDQLAL PT + TVL++G
Sbjct: 30 GTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGP 89
Query: 424 RNAREAVRHFGPAPGAPRSHTKPYVRTKDMK 516
+N REAV+HFGPAPG P SHTKPYVR K
Sbjct: 90 KNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120
Score = 35.9 bits (79), Expect = 0.020
Identities = 17/33 (51%), Positives = 25/33 (75%)
Frame = +2
Query: 155 MSRINRPPISVSRLARHMKKPTXEGLIAVVVGT 253
MS++N+ P+S+SRL R+M +G IAV+VGT
Sbjct: 1 MSKVNKAPLSLSRLVRYM--DGKDGKIAVIVGT 31
>At5g28190.1 68418.m03413 hypothetical protein
Length = 839
Score = 32.7 bits (71), Expect = 0.19
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Frame = -1
Query: 519 LFHVLGANIGFSVRA-RCSWSRAKVTHCLTSISLTLYQ-------YCLLASRSTKSQLIK 364
L HVL +++GFS+R C + + +C + S LY+ Y LL + ++
Sbjct: 458 LMHVLRSSMGFSIRVMTCRRWKDSLLYCGNNNSGELYEEHTDGEKYHLLVVVGSFGGVVM 517
Query: 363 SKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHV---ICAVPTTTAIKPSXVGFFMW 202
S NM+SS H+ +++ HV + PTT+ + S F W
Sbjct: 518 IGGLSKVHILHHHQVLVNMESSMVHVIFVLLHHVFWMVLVFPTTSISRESRASFICW 574
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 31.5 bits (68), Expect = 0.43
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 457 GQSDALPHEHFADLVPVLSSCQSEHEEPADQ 365
G S LPH +PV SSC E +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.1 bits (67), Expect = 0.57
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 300 CSSCYRKSSCTHFGCWRRNSYF 365
CS+C RKS+ + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 352 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 444
E L FD L L+ P+GK LV G + + V
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGKSTV 320
>At3g28415.1 68416.m03551 P-glycoprotein, putative contains
ATP-binding cassette; related to multi drug resistance
proteins
Length = 1221
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 364 FDQLALRAPTGKKTVLVQGQRNAREAV 444
FD L LR P+GK LV G + + V
Sbjct: 356 FDDLCLRIPSGKSVALVGGSGSGKSTV 382
>At3g28390.1 68416.m03547 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1225
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 364 FDQLALRAPTGKKTVLVQGQRNAREAV 444
FD L LR P+GK LV G + + V
Sbjct: 365 FDDLCLRVPSGKTVALVGGSGSGKSTV 391
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 264 RETVQDTEDDGGCSSCY--RKSSCTHFGCWRRNSYF*SAGSSCS 389
R+ + +E GGC+SC KS T C R+ + S G+ CS
Sbjct: 145 RDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCS 188
>At1g05440.1 68414.m00552 expressed protein ; expression supported
by MPSS
Length = 393
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -1
Query: 441 CLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSF 319
CL S++ TL L +S+ ++L + NF S+ ++ TSF
Sbjct: 71 CLDSLNATLDLMPLSVQKSSLTKLSSASNFKSTVESTPTSF 111
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.5 bits (58), Expect = 7.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 300 CSSCYRKSSCTHFGCWR 350
CSSC+ K C CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375
>At4g10340.1 68417.m01699 chlorophyll A-B binding protein CP26,
chloroplast / light-harvesting complex II protein 5 /
LHCIIc (LHCB5) identical to SP|Q9XF89 Chlorophyll
A/B-binding protein CP26, chloroplast precursor
(Light-harvesting complex II protein 5) (LHCB5) (LHCIIc)
{Arabidopsis thaliana}; contains Pfam profile: PF00504
chlorophyll A-B binding protein; chlorophyll a/b-binding
protein CP26 in PS II, Brassica juncea, gb:X95727
Length = 280
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 185 VSRLARHMKKPTXEGLIAVVVGTAQ 259
V LA+H+ P L+ V+ GTA+
Sbjct: 251 VENLAKHLSDPFGNNLLTVIAGTAE 275
>At3g28380.1 68416.m03546 P-glycoprotein, putative similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1240
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 352 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 444
E FD L L+ P GK LV G + + V
Sbjct: 373 ETTIFDDLCLKIPAGKTVALVGGSGSGKSTV 403
>At3g28345.1 68416.m03541 ABC transporter family protein similar to
P-glycoprotein [Arabidopsis thaliana] GI:3849833;
contains Pfam profiles PF00005: ABC transporter,
PF00664: ABC transporter transmembrane region
Length = 1240
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 352 EILTFDQLALRAPTGKKTVLVQGQRNAREAV 444
E FD LR P+GK LV G + + V
Sbjct: 373 ETSIFDDFCLRVPSGKTVALVGGSGSGKSTV 403
>At1g31870.1 68414.m03917 expressed protein
Length = 561
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 433 REAVRHFGPAPGAPRSHTKPYVRTKDM 513
R RH P+P R HTKP DM
Sbjct: 151 RRRKRHNSPSPEPNRKHTKPVSLDSDM 177
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,310,573
Number of Sequences: 28952
Number of extensions: 286471
Number of successful extensions: 788
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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