Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30145
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 161 4e-41
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 161 4e-41
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 132 2e-32
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 132 2e-32
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 132 2e-32
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 79 3e-16
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 44 1e-05
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 40 2e-04
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 38 6e-04
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 24 9.8
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 24 9.8
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 9.8
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 161 bits (392), Expect = 4e-41
Identities = 77/85 (90%), Positives = 81/85 (95%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Query: 182 LRLRGGTIEPSLRILAMKYNCEKMI 256
LRLRGG IEPSL+ LA KYNCEK I
Sbjct: 71 LRLRGGIIEPSLKALASKYNCEKQI 95
Score = 62.9 bits (146), Expect = 2e-11
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = +1
Query: 256 CRKCYARLHPRATNCRKTKCGHTNNLRP 339
CRKCYARL PRATNCRK KCGHTN LRP
Sbjct: 96 CRKCYARLPPRATNCRKKKCGHTNQLRP 123
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 161 bits (392), Expect = 4e-41
Identities = 77/85 (90%), Positives = 81/85 (95%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Query: 182 LRLRGGTIEPSLRILAMKYNCEKMI 256
LRLRGG IEPSL+ LA KYNCEK I
Sbjct: 71 LRLRGGIIEPSLKALASKYNCEKQI 95
Score = 62.9 bits (146), Expect = 2e-11
Identities = 25/28 (89%), Positives = 25/28 (89%)
Frame = +1
Query: 256 CRKCYARLHPRATNCRKTKCGHTNNLRP 339
CRKCYARL PRATNCRK KCGHTN LRP
Sbjct: 96 CRKCYARLPPRATNCRKKKCGHTNQLRP 123
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 132 bits (320), Expect = 2e-32
Identities = 63/66 (95%), Positives = 66/66 (100%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 71 LRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 132 bits (320), Expect = 2e-32
Identities = 63/66 (95%), Positives = 66/66 (100%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 71 LRLRGG 76
Score = 132 bits (320), Expect = 2e-32
Identities = 63/66 (95%), Positives = 66/66 (100%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 87 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 147 LRLRGG 152
Score = 132 bits (320), Expect = 2e-32
Identities = 63/66 (95%), Positives = 66/66 (100%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 163 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 223 LRLRGG 228
Score = 132 bits (320), Expect = 2e-32
Identities = 63/66 (95%), Positives = 66/66 (100%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 239 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 299 LRLRGG 304
Score = 132 bits (320), Expect = 2e-32
Identities = 63/66 (95%), Positives = 66/66 (100%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 315 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 375 LRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 132 bits (320), Expect = 2e-32
Identities = 63/66 (95%), Positives = 66/66 (100%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 71 LRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 79.0 bits (186), Expect = 3e-16
Identities = 32/67 (47%), Positives = 49/67 (73%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
K I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 11 KEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
Query: 182 LRLRGGT 202
L LRGG+
Sbjct: 71 LALRGGS 77
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 44.0 bits (99), Expect = 1e-05
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES-TLHL 178
K + +V A I +K KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++ + +
Sbjct: 12 KFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQDFIVCM 71
Query: 179 VLRLRGGTIEP 211
V R + T P
Sbjct: 72 VSRPKTSTSTP 82
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 39.9 bits (89), Expect = 2e-04
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = +2
Query: 20 VEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 190
V++ ++ +K I I ++QRLI+AG+ L+D +L Y IQ ++HLV L
Sbjct: 20 VDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLVKTL 76
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 38.3 bits (85), Expect = 6e-04
Identities = 18/57 (31%), Positives = 32/57 (56%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 172
K LE+E ++T +K ++ +PP++Q++I G QL+D L I+ +TL
Sbjct: 11 KKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKDDVLLGSVGIKPNATL 67
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 135 LFQTITSRKNPHFTW 179
LFQT + KNPH W
Sbjct: 117 LFQTDMNEKNPHDLW 131
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 24.2 bits (50), Expect = 9.8
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 41 ENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 160
E ++Q++ + P+Q R+ + GKQ D + D +QK
Sbjct: 252 EQYTERVQNEVTLSPEQLRIQYVGKQ--DPKKHLDAEVQK 289
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 9.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 125 DGRTLSDYNIQKESTLHLVLRLR 193
DG TL++ N HL++RL+
Sbjct: 432 DGETLNEINTNNPEREHLIVRLK 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,543
Number of Sequences: 5004
Number of extensions: 36201
Number of successful extensions: 101
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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