Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30145
(462 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 3e-32
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 3e-32
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 134 3e-32
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 134 3e-32
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 124 5e-29
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 108 2e-24
SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32) 68 4e-12
SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.) 64 7e-11
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 52 2e-07
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 39 0.002
SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11) 36 0.012
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12) 36 0.016
SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05) 36 0.022
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.038
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 33 0.11
SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07) 33 0.15
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_49939| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01) 28 4.3
SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09) 28 4.3
SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055) 27 7.6
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 27 10.0
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 71 LRLRGG 76
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 71 LRLRGG 76
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 87 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 147 LRLRGG 152
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 163 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 223 LRLRGG 228
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 239 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 299 LRLRGG 304
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 315 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 375 LRLRGG 380
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 391 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 450
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 451 LRLRGG 456
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 467 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 526
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 527 LRLRGG 532
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 71 LRLRGG 76
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 87 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 147 LRLRGG 152
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 163 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 223 LRLRGG 228
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 239 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 299 LRLRGG 304
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 315 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 375 LRLRGG 380
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 134 bits (324), Expect = 3e-32
Identities = 65/66 (98%), Positives = 65/66 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Query: 182 LRLRGG 199
LRLRGG
Sbjct: 71 LRLRGG 76
Score = 81.4 bits (192), Expect = 3e-16
Identities = 37/61 (60%), Positives = 50/61 (81%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
KT TL+VEASDT+E+VK KIQ++EGIPP QRL++ ++L D R+L+DYNI++ S LHL
Sbjct: 86 KTFTLDVEASDTVESVKEKIQNREGIPPKVQRLLYEEEELVDNRSLADYNIKQGSILHLF 145
Query: 182 L 184
L
Sbjct: 146 L 146
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 124 bits (298), Expect = 5e-29
Identities = 59/66 (89%), Positives = 60/66 (90%)
Frame = +2
Query: 77 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPSLRILAMKYNCEKMI 256
IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG IEPSLRILA KYNC+KMI
Sbjct: 2 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGVIEPSLRILAQKYNCDKMI 61
Query: 257 AVNAMP 274
N P
Sbjct: 62 CRNYGP 67
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 108 bits (260), Expect = 2e-24
Identities = 52/53 (98%), Positives = 52/53 (98%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 160
KTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 89 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 141
>SB_23330| Best HMM Match : Ribosomal_L40e (HMM E-Value=1.8e-32)
Length = 78
Score = 67.7 bits (158), Expect = 4e-12
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +1
Query: 256 CRKCYARLHPRATNCRKTKCGHTNNLRP 339
CRKCYARLHPRATNCRK KCGH+NNLRP
Sbjct: 46 CRKCYARLHPRATNCRKKKCGHSNNLRP 73
Score = 63.7 bits (148), Expect = 7e-11
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 161 ESTLHLVLRLRGGTIEPSLRILAMKYNCEKMI 256
ESTLHLVLRLRGG IEPSLRILA KYNC+KMI
Sbjct: 14 ESTLHLVLRLRGGVIEPSLRILAQKYNCDKMI 45
>SB_30857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 48
Score = 63.7 bits (148), Expect = 7e-11
Identities = 29/32 (90%), Positives = 30/32 (93%)
Frame = +2
Query: 161 ESTLHLVLRLRGGTIEPSLRILAMKYNCEKMI 256
ESTLHLVLRLRGG IEPSLRILA KYNC+KMI
Sbjct: 14 ESTLHLVLRLRGGVIEPSLRILAQKYNCDKMI 45
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 52.0 bits (119), Expect = 2e-07
Identities = 29/63 (46%), Positives = 37/63 (58%)
Frame = +2
Query: 35 TIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGTIEPS 214
TI VK I+ K G P DQQRL+F G+ L D T I +TLHL++RL GG P+
Sbjct: 93 TIIEVKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGIFAGATLHLIVRLLGGEC-PT 151
Query: 215 LRI 223
R+
Sbjct: 152 YRL 154
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQ---DKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKES 166
+T +E+ +T+ +K KI+ K+ P +LI+AGK L D L +YNI ++S
Sbjct: 77 QTFKVEIGEDETVLKLKQKIEADKGKDAYPHGNIKLIYAGKILNDDNPLKEYNIDEKS 134
>SB_25220| Best HMM Match : Ank (HMM E-Value=6.2e-11)
Length = 744
Score = 36.3 bits (80), Expect = 0.012
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +2
Query: 47 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 160
+K++I+ K GIP D QRL F K+L D TL+ N+++
Sbjct: 32 LKSRIELKTGIPGDIQRLHFMNKELYDDATLAKVNLKQ 69
>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
Length = 348
Score = 35.9 bits (79), Expect = 0.016
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +2
Query: 11 TLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLSDYNIQKESTLHLVLR 187
TL+V +EN +A ++ + G+P + L G QL D +TL+ Y++++ + +V R
Sbjct: 14 TLDVSVDLEVENFRALLEFESGVPASEISLYHDGVQLSDLKKTLTAYSVKENDVILMVRR 73
>SB_10325| Best HMM Match : ubiquitin (HMM E-Value=3.4e-05)
Length = 198
Score = 35.5 bits (78), Expect = 0.022
Identities = 14/28 (50%), Positives = 22/28 (78%)
Frame = +2
Query: 68 KEGIPPDQQRLIFAGKQLEDGRTLSDYN 151
+EGIP ++QRLIF GK L+D + L +++
Sbjct: 19 EEGIPAERQRLIFKGKVLQDEKKLKEFD 46
>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1076
Score = 34.7 bits (76), Expect = 0.038
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +2
Query: 14 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 193
L++ + TIE ++ ++ DK G PP QR I K + +L +++ + L
Sbjct: 50 LQIPLNTTIEKLQNEVADKYGFPPKVQRWIIGKKMAKPNESLLQCKVRETGFTAYLYLLS 109
Query: 194 GGTIE 208
G +E
Sbjct: 110 GRNVE 114
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 33.1 bits (72), Expect = 0.11
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 74 GIPPDQQRLIFAGKQLEDGRTLSDYN 151
GIP ++QRLIF GK L+D + L +++
Sbjct: 1 GIPAERQRLIFKGKVLQDEKKLKEFD 26
>SB_32865| Best HMM Match : AA_permease (HMM E-Value=7.7e-07)
Length = 642
Score = 32.7 bits (71), Expect = 0.15
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = -1
Query: 369 GYYLILDLLFGSQIVSVSALCLATVGSTRMKTGIAFTAIIFS 244
G +++ LL G+ V +S+LC A GS KTG ++T F+
Sbjct: 19 GPAIVISLLIGAIPVCLSSLCYAEFGSRISKTGSSYTYTYFA 60
>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1353
Score = 31.1 bits (67), Expect = 0.46
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 35 TIENVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLSDYNIQKESTLHL 178
T+ ++K + +K G+ RL+ GK++ D L DYNI T+ L
Sbjct: 86 TVGDLKTMVTNKTGLHVSVFRLVIPEGKEMFDCNLLKDYNISTGDTIRL 134
>SB_49939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 96 VSSLPGNN*KMAALFQTITSRKNPHFTWF 182
+ ++ N K+AA+ I+S NP FTWF
Sbjct: 8 IGAIASNAEKVAAVAGAISSLDNPGFTWF 36
>SB_35739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 27.9 bits (59), Expect = 4.3
Identities = 17/78 (21%), Positives = 38/78 (48%)
Frame = +2
Query: 5 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 184
++ + D +V +I+D G + + G + D + +++ + L LVL
Sbjct: 241 SVDATLRGQDISASVYQEIRDLGGTGVIALKPVMRGPDINDDGSHERESLRANAVLPLVL 300
Query: 185 RLRGGTIEPSLRILAMKY 238
R++GG + +R LA+++
Sbjct: 301 RMKGGE-DSQVRDLAVRF 317
>SB_22742| Best HMM Match : ubiquitin (HMM E-Value=0.01)
Length = 792
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +2
Query: 5 TITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKEST 169
T+ +E+ ++E++KA+ + + GIP + RL LED + + +++T
Sbjct: 194 TLEIEITERTSVEDLKAEAELRVGIPVELIRLQVNKVNLEDSEKICERGHLQKAT 248
>SB_11774| Best HMM Match : M (HMM E-Value=8.5e-09)
Length = 1998
Score = 27.9 bits (59), Expect = 4.3
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 83 PDQQRLIFAGKQLEDGRTLSDY--NIQKESTLHLVLRLRGGTI 205
PD ++ I G L+DG+T+ D + ++E L+ ++ GT+
Sbjct: 538 PDSKKNILEGLDLQDGKTVEDLLSDYRRELELYRQIKDENGTV 580
>SB_11656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 11 TLEVE-ASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 127
T E+E A +++E + I GIP D+Q L+ G + D
Sbjct: 14 TFEMEMAMESVETLMGSIASSTGIPVDKQVLLICGGEALD 53
>SB_54258| Best HMM Match : ubiquitin (HMM E-Value=0.00055)
Length = 411
Score = 27.1 bits (57), Expect = 7.6
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 2 KTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 181
+ ITL + ++ + G P + ++ K LED T++D + Q +TL +
Sbjct: 176 QVITLHCNPRQSFSELRNHFSSEFGQPAEAILMLHEDKILEDQGTIADLSHQPGATLQIE 235
Query: 182 LR 187
L+
Sbjct: 236 LQ 237
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 26.6 bits (56), Expect = 10.0
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = +3
Query: 81 LQTNNVSSLPGNN*KM-AALFQTITSRK--NPHFT--WF*DLEEVQLNLPFAFS 227
++ NNVSS PG N + + TI +RK NP T WF + Q + AF+
Sbjct: 641 VECNNVSSCPGGNVTLNCSAMATIDTRKLSNPVMTSEWFYYRDLTQRRIKRAFN 694
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,775,033
Number of Sequences: 59808
Number of extensions: 289478
Number of successful extensions: 726
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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