Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30144
         (498 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604           31   0.68 
08_02_0082 + 12059692-12060209,12060484-12060973                       29   2.7  
03_05_0487 + 24838620-24838967,24840526-24840747,24840819-248411...    28   3.6  
02_04_0258 + 21339682-21339806,21340635-21340730,21340905-213409...    27   6.3  

>11_03_0035 - 9130678-9130887,9130963-9131255,9132328-9132604
          Length = 259

 Score = 30.7 bits (66), Expect = 0.68
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +3

Query: 27  GADNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAI 206
           G D ++L E  +    +     V+       + NAAK   Y E K   K ++C F K   
Sbjct: 45  GEDKINLEEMLRHAEPEVPMGSVRGLNNFEALQNAAKEVMYDESKGCNKKIVCEFGKVTK 104

Query: 207 LNSDGT 224
             S GT
Sbjct: 105 KPSKGT 110


>08_02_0082 + 12059692-12060209,12060484-12060973
          Length = 335

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 365 PL**HWKISKALSAASCPVLSLHCSSTLWASDLLTPGEV 249
           PL  H     A+SAA C  +   C    W S++  PG V
Sbjct: 33  PLTEHDDAISAMSAAHCNNMQFRCYRGFWISEMWAPGVV 71


>03_05_0487 +
           24838620-24838967,24840526-24840747,24840819-24841109,
           24841316-24841513,24841641-24841705,24841788-24841874,
           24841988-24842108,24842200-24842244,24842321-24842458,
           24842571-24842643,24842723-24842799,24842882-24842989,
           24843108-24843224,24843524-24843679,24843780-24843881,
           24844036-24844161,24844237-24844314,24844390-24844485,
           24844592-24844707,24844781-24844850,24844930-24844983,
           24845062-24845205,24845297-24845596,24845780-24846202,
           24846316-24846429
          Length = 1222

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 191 QQIRNLELRWYTEHGCCARKLLLV 262
           + IR  ELR YT++G C+R L +V
Sbjct: 641 RDIRLKELRLYTDYGRCSRPLFIV 664


>02_04_0258 +
           21339682-21339806,21340635-21340730,21340905-21340980,
           21341085-21341143,21341280-21341380,21341447-21341773,
           21341861-21342021,21342100-21342303,21342735-21342966,
           21343629-21344239
          Length = 663

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 27  GADNVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYS 152
           G+ N H   +Q  KA Q ++    E+  ST   N  + G+Y+
Sbjct: 436 GSSNTHKQLSQPAKAGQTSTGTTSEADGSTSAYNGNQAGRYA 477


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,469,604
Number of Sequences: 37544
Number of extensions: 201630
Number of successful extensions: 480
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)