Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30144
         (498 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.9  
SB_44545| Best HMM Match : ASC (HMM E-Value=4.8e-13)                   27   6.5  
SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)                27   6.5  
SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)                    27   8.6  

>SB_6478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 621

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +3

Query: 36  NVHLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSE 155
           N HL     E+   ++ +C+K + + ++ ++  KTG+  E
Sbjct: 253 NAHLVHADSEQDGIFSDKCIKLAHMHSDAVDFPKTGECPE 292


>SB_44545| Best HMM Match : ASC (HMM E-Value=4.8e-13)
          Length = 386

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 19/51 (37%), Positives = 22/51 (43%)
 Frame = +3

Query: 111 STEVINAAKTGQYSEDKAFKKFVLCFFNKSAILNSDGTLNMDVALENFSWC 263
           STE I  A   Q  E  AF   VLC   +S     DG LN     E+ + C
Sbjct: 322 STENIALASPNQPMEMDAFSHLVLCLKRQSPY---DGNLNQQETKESTACC 369


>SB_36114| Best HMM Match : Spectrin (HMM E-Value=0.034)
          Length = 352

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 42  HLTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKA 164
           H  +T+K+   + + E  K S V T+  NAAKTG   E  A
Sbjct: 190 HSPKTRKKFEARLSEEEGKVSHVRTQYENAAKTGMLDEATA 230


>SB_28275| Best HMM Match : REJ (HMM E-Value=0.0012)
          Length = 1551

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 24   CGADNVHLTETQKEKAKQYTSECVKESGVS 113
            C   +V +TE+Q  ++K + +E  K  G+S
Sbjct: 1110 CSYPSVSITESQANQSKSFPTEYTKAQGIS 1139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,668,505
Number of Sequences: 59808
Number of extensions: 242032
Number of successful extensions: 575
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)