Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30144
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79360.1 68414.m09248 transporter-related low similarity to S...    30   1.00 
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR...    29   1.3  
At2g29340.2 68415.m03563 short-chain dehydrogenase/reductase (SD...    29   1.3  
At2g29340.1 68415.m03564 short-chain dehydrogenase/reductase (SD...    29   1.3  
At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa ...    28   4.0  
At2g25560.1 68415.m03059 DNAJ heat shock N-terminal domain-conta...    27   9.3  

>At1g79360.1 68414.m09248 transporter-related low similarity to
           SP|O76082 Organic cation/carnitine transporter 2 (Solute
           carrier family 22, member 5) (High-affinity
           sodium-dependent carnitine cotransporter) {Homo
           sapiens}; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 527

 Score = 29.9 bits (64), Expect = 1.00
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 375 CLGPFVVALEDLEGFIGCVLPGLILA 298
           C G FV  L +   F+GC++ GL+L+
Sbjct: 107 CAGSFVKGLPESSFFVGCLIGGLVLS 132


>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1231

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 246 LAQHPCSVYHLSSRLRIC 193
           +A+ PCS++HLSS  R+C
Sbjct: 831 IAELPCSIFHLSSLRRLC 848


>At2g29340.2 68415.m03563 short-chain dehydrogenase/reductase (SDR)
           family protein similar to tropinone reductase-I
           GI:424160 from [Datura stramonium]
          Length = 262

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 45  LTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVL 182
           L +  K  A ++  + ++ + V+  VIN   +  Y ED +FKK +L
Sbjct: 166 LIQLAKNLACEWAKDGIRANAVAPNVINTPLSQSYLEDVSFKKALL 211


>At2g29340.1 68415.m03564 short-chain dehydrogenase/reductase (SDR)
           family protein similar to tropinone reductase-I
           GI:424160 from [Datura stramonium]
          Length = 307

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 45  LTETQKEKAKQYTSECVKESGVSTEVINAAKTGQYSEDKAFKKFVL 182
           L +  K  A ++  + ++ + V+  VIN   +  Y ED +FKK +L
Sbjct: 166 LIQLAKNLACEWAKDGIRANAVAPNVINTPLSQSYLEDVSFKKALL 211


>At4g21710.1 68417.m03144 DNA-directed RNA polymerase II 135 kDa
           polypeptide / RNA polymerase II subunit 2 (RPB135)
           (RPB2) (RP140) identical to SP|P38420 DNA-directed RNA
           polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA
           polymerase II subunit 2) {Arabidopsis thaliana}
          Length = 1188

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 191 QQIRNLELRWYTEHGCCARKLLLV 262
           + IR  ELR YT++G C+R L +V
Sbjct: 608 RDIRLKELRIYTDYGRCSRPLFIV 631


>At2g25560.1 68415.m03059 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226
           DnaJ domain
          Length = 656

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +3

Query: 105 GVSTEVINAAKTGQYSEDKAFKKFVLCFFNKSAILNSDGTLNMDVALENF 254
           G+ TE +N    G      A +    C  N    LNS G L +DV   +F
Sbjct: 385 GMETEDLNGFNAGSSVNKNAIES---CCMNTDKELNSLGALTLDVTAPDF 431


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,628,219
Number of Sequences: 28952
Number of extensions: 175568
Number of successful extensions: 470
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)