Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30142
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383...    30   2.1  
01_07_0205 - 41978437-41980599,41980805-41981215                       29   3.7  

>04_04_1634 +
           34937087-34937198,34937652-34937790,34938263-34938334,
           34938414-34938546,34938591-34938730,34939478-34939585,
           34939650-34939720,34940297-34940545,34940618-34940823,
           34940894-34941026,34941099-34941101,34941136-34941293,
           34941420-34941683,34941869-34942114
          Length = 677

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/59 (27%), Positives = 29/59 (49%)
 Frame = +2

Query: 107 P*VRPSSWAKPERSSDKYVVTFESLQKKLVGATSSIRIRVSCKACMNVAWASTSRLINK 283
           P +R SSW + +  SD+  V  +S   K +   S   + V+C+   N+  +S   ++ K
Sbjct: 320 PSIRISSWNRSKSWSDEITVLIDSDMLKSLPKLSRQELEVACEDFSNIIGSSPETVVYK 378


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 550 CLRKQLPKYLRFHAALRNLLPYCSKCYDLDQI 455
           C  KQLPK LR   +LRNL  Y   C+ L+ +
Sbjct: 583 CYLKQLPKDLRKMKSLRNL--YLDGCFRLENV 612


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,069,799
Number of Sequences: 37544
Number of extensions: 333499
Number of successful extensions: 638
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 638
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)