Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30142
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g57570.1 68416.m06410 expressed protein                             29   3.1  
At4g20310.1 68417.m02966 peptidase M50 family protein / sterol-r...    28   7.1  
At3g17030.1 68416.m02174 expressed protein                             27   9.4  

>At3g57570.1 68416.m06410 expressed protein 
          Length = 1057

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = -2

Query: 161 HICPKTF-QALPRRM-DVLKDSAVWGRFASSDSI 66
           H+CP    + LP+R+ D +  S ++G+F S DS+
Sbjct: 689 HLCPLLILRLLPQRVFDDIDSSTIYGKFLSGDSV 722


>At4g20310.1 68417.m02966 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein weak similarity to SP|O54862
           Membrane-bound transcription factor site 2 protease (EC
           3.4.24.-) (Sterol-regulatory element-binding proteins
           intramembrane protease){Cricetulus griseus}; contains
           Pfam profile PF02163: Sterol-regulatory element binding
           protein (SREBP) site 2 protease
          Length = 513

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -3

Query: 181 EGFKGNYIFVRRPFRLCPGGWTYSRTLPC 95
           EG+KG    V   F +CPG  T  RT+PC
Sbjct: 287 EGYKGK--MVENQF-VCPGDLTAFRTMPC 312


>At3g17030.1 68416.m02174 expressed protein
          Length = 648

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +1

Query: 403 NLFKLYLMNTYYQIIIDKFGLSRSTLSNMVTNCVM--PRESAGT 528
           N   LYL   YY+++    G+ R     ++T C +   RE  GT
Sbjct: 168 NTIDLYLHRRYYELVETPNGILRKGREVLITGCYLRTAREGFGT 211


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,613,629
Number of Sequences: 28952
Number of extensions: 297090
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)