Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30141
(704 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15; Bilater... 181 2e-44
UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6; Metazoa|... 105 1e-21
UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71; Euteleo... 89 7e-17
UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep: ... 81 2e-14
UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistos... 80 6e-14
UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes p... 77 3e-13
UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia a... 75 1e-12
UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=... 75 2e-12
UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15; Pezizom... 73 9e-12
UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11; Eukar... 70 6e-11
UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffith... 69 9e-11
UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2; Cryptosp... 69 1e-10
UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia ... 69 1e-10
UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17; Eukaryo... 67 5e-10
UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2; Eukaryot... 66 1e-09
UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2; Sordaria... 64 3e-09
UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2; Caenorha... 62 1e-08
UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e, puta... 61 3e-08
UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5; Oligohym... 57 4e-07
UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16; Dikar... 57 5e-07
UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal ... 56 6e-07
UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=1... 48 2e-04
UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7... 44 0.003
UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis vi... 40 0.060
UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia... 40 0.060
UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5; Archae... 40 0.060
UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8; Euryar... 40 0.079
UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole ge... 39 0.10
UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n... 38 0.32
UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1; Encephal... 38 0.32
UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14; Archa... 36 1.3
UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1; ... 34 3.0
UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep: S... 34 3.9
UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:... 33 5.2
UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2; Lactoc... 33 9.0
>UniRef50_Q5UAT5 Cluster: 60S ribosomal protein L6; n=15;
Bilateria|Rep: 60S ribosomal protein L6 - Bombyx mori
(Silk moth)
Length = 273
Score = 181 bits (440), Expect = 2e-44
Identities = 85/88 (96%), Positives = 86/88 (97%)
Frame = +3
Query: 243 GNQNVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 422
G + VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL
Sbjct: 83 GTRTVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 142
Query: 423 VGILPSGLLLVTGPFAFNSCPLRRIPQR 506
VGILPSGLLLVTGPFAFNSCPLRRIPQR
Sbjct: 143 VGILPSGLLLVTGPFAFNSCPLRRIPQR 170
Score = 96.7 bits (230), Expect = 5e-19
Identities = 46/58 (79%), Positives = 46/58 (79%)
Frame = +1
Query: 88 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTYP 261
NYDLGNGVMRFSKSKMFHKKAKYKFIG LTVVVKQIGGEKNGGTRT P
Sbjct: 31 NYDLGNGVMRFSKSKMFHKKAKYKFIGKKNPKPEKPKKLTVVVKQIGGEKNGGTRTVP 88
Score = 86.6 bits (205), Expect = 5e-16
Identities = 43/73 (58%), Positives = 43/73 (58%)
Frame = +2
Query: 464 FCFQFVPATPYSSALVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 643
F F P VIGTSTRISLGNFKLPKHFNDDYF EGDDIFA
Sbjct: 157 FAFNSCPLRRIPQRYVIGTSTRISLGNFKLPKHFNDDYFKKNKKCVKRTVKRKEGDDIFA 216
Query: 644 TKKEKYVPLSSAK 682
TKKEKYVP K
Sbjct: 217 TKKEKYVPSEQRK 229
>UniRef50_Q9V9W3 Cluster: 60S ribosomal protein L6; n=6;
Metazoa|Rep: 60S ribosomal protein L6 - Drosophila
melanogaster (Fruit fly)
Length = 262
Score = 105 bits (251), Expect = 1e-21
Identities = 52/88 (59%), Positives = 62/88 (70%)
Frame = +3
Query: 243 GNQNVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 422
G + V LK+ K+ YPT+ ++ FS+H R R NL GTV ILLAGRH GKRVVL
Sbjct: 75 GERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVVL 134
Query: 423 VGILPSGLLLVTGPFAFNSCPLRRIPQR 506
+ +L SGLLLVTGPFA NSCPLRR+ QR
Sbjct: 135 LKVLASGLLLVTGPFALNSCPLRRVSQR 162
Score = 52.0 bits (119), Expect = 1e-05
Identities = 28/78 (35%), Positives = 38/78 (48%)
Frame = +2
Query: 464 FCFQFVPATPYSSALVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 643
F P S VIGTS+++ LG FK+P+H ND YF DIFA
Sbjct: 149 FALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAKKDKKTGEA---DIFA 205
Query: 644 TKKEKYVPLSSAKPIRRQ 697
KKE++VP K +++
Sbjct: 206 AKKERFVPNEQRKKDQKE 223
Score = 39.9 bits (89), Expect = 0.060
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 88 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRT 255
N L G++R+SK++M+ ++A Y+ VK+IGG KNGG RT
Sbjct: 23 NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKNGGERT 78
>UniRef50_Q02878 Cluster: 60S ribosomal protein L6; n=71;
Euteleostomi|Rep: 60S ribosomal protein L6 - Homo
sapiens (Human)
Length = 288
Score = 89.4 bits (212), Expect = 7e-17
Identities = 44/90 (48%), Positives = 60/90 (66%), Gaps = 2/90 (2%)
Frame = +3
Query: 243 GNQNVPLKRRKSFYPTQEKIRA--SSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 416
G + V L++ +YPT++ R S G +PFS+HVR++R ++ GT+ I+L GRH GKRV
Sbjct: 103 GTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRV 162
Query: 417 VLVGILPSGLLLVTGPFAFNSCPLRRIPQR 506
V + L SGLLLVTGP N PLRR Q+
Sbjct: 163 VFLKQLASGLLLVTGPLVLNRVPLRRTHQK 192
Score = 41.9 bits (94), Expect = 0.015
Identities = 25/61 (40%), Positives = 30/61 (49%)
Frame = +2
Query: 479 VPATPYSSALVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 658
VP VI TST+I + N K+PKH D YF EG +IF T+KEK
Sbjct: 184 VPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYF---KKKKLRKPRHQEG-EIFDTEKEK 239
Query: 659 Y 661
Y
Sbjct: 240 Y 240
Score = 37.5 bits (83), Expect = 0.32
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +1
Query: 97 LGNGVMRFSKSKMFHKKA----KYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTR 252
L G+ R+S+S M+ +KA KY L V K +GG+KNGGTR
Sbjct: 50 LVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGGTR 105
>UniRef50_A7S4S4 Cluster: Predicted protein; n=5; Eukaryota|Rep:
Predicted protein - Nematostella vectensis
Length = 244
Score = 81.4 bits (192), Expect = 2e-14
Identities = 43/87 (49%), Positives = 56/87 (64%)
Frame = +3
Query: 243 GNQNVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 422
G + VP++R +YPT++ +R R + ++R ++ GTV ILLAG H GKRVV
Sbjct: 63 GKRVVPVQRESRYYPTED-VRRRLANRK-KPGMAKLRSSITPGTVLILLAGAHRGKRVVF 120
Query: 423 VGILPSGLLLVTGPFAFNSCPLRRIPQ 503
+ L SGLLLVTGPF N PLRRIPQ
Sbjct: 121 LKQLNSGLLLVTGPFKINGVPLRRIPQ 147
Score = 37.9 bits (84), Expect = 0.24
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +1
Query: 88 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTYPSN 267
N +L G+ R+S+S ++ K+A YK T K IGG+KNGG R P
Sbjct: 12 NPELAPGISRYSRSAIYKKRALYKRKKTGVKKVVQDEPRTKT-KDIGGDKNGGKRVVPVQ 70
Query: 268 VGS---PSTPLRRK 300
S P+ +RR+
Sbjct: 71 RESRYYPTEDVRRR 84
>UniRef50_Q5DE99 Cluster: 60S ribosomal protein L6; n=1; Schistosoma
japonicum|Rep: 60S ribosomal protein L6 - Schistosoma
japonicum (Blood fluke)
Length = 238
Score = 79.8 bits (188), Expect = 6e-14
Identities = 44/85 (51%), Positives = 55/85 (64%), Gaps = 3/85 (3%)
Frame = +3
Query: 258 PLKRRKSFYPTQE---KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVG 428
P R Y TQ+ K+R + FS HVR+IR +++ GTV ILLAG H GKRV+ +
Sbjct: 55 PKTRFPRSYVTQQGKRKLRLRRA-KCFSNHVRKIRSSIQPGTVLILLAGPHKGKRVIFLK 113
Query: 429 ILPSGLLLVTGPFAFNSCPLRRIPQ 503
L SGLLLVTGPF +N PLRR+ Q
Sbjct: 114 ALKSGLLLVTGPFKYNGVPLRRVNQ 138
Score = 40.3 bits (90), Expect = 0.045
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 464 FCFQFVPATPYSSALVIGTSTRISLGNFKLPKHFNDDYF 580
F + VP + VI TSTRI + F +PKH +D+YF
Sbjct: 126 FKYNGVPLRRVNQCYVIATSTRIDISKFDVPKHIDDEYF 164
>UniRef50_Q6B8B0 Cluster: 60S ribosomal protein L6; n=1; Ixodes
pacificus|Rep: 60S ribosomal protein L6 - Ixodes
pacificus (western blacklegged tick)
Length = 268
Score = 77.4 bits (182), Expect = 3e-13
Identities = 41/89 (46%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Frame = +3
Query: 243 GNQNVPLKRRKSFYPTQE--KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRV 416
G + +PLK+ + YPT++ + + +S +P S+ +R + GTV ILLAG H GKRV
Sbjct: 79 GKRVLPLKKERRSYPTEDSPQHKRTSHMKPSSRTRVALRKRITPGTVLILLAGPHRGKRV 138
Query: 417 VLVGILPSGLLLVTGPFAFNSCPLRRIPQ 503
V + L +GLL VTGP+ N CPLRRI Q
Sbjct: 139 VFLKQLKTGLLPVTGPYGVNGCPLRRINQ 167
Score = 47.6 bits (108), Expect = 3e-04
Identities = 24/58 (41%), Positives = 30/58 (51%)
Frame = +1
Query: 88 NYDLGNGVMRFSKSKMFHKKAKYKFIGXXXXXXXXXXXLTVVVKQIGGEKNGGTRTYP 261
N+ L GV FS+SKMFHK+ +K V VK++ GEKNGG R P
Sbjct: 27 NHKLPGGVWLFSRSKMFHKRGLFKVKHAAPTKEKRKRKKRVTVKRVKGEKNGGKRVLP 84
>UniRef50_A3F4R4 Cluster: 60S ribosomal protein L6; n=1; Taenia
asiatica|Rep: 60S ribosomal protein L6 - Taenia asiatica
(Asian tapeworm)
Length = 212
Score = 75.4 bits (177), Expect = 1e-12
Identities = 37/60 (61%), Positives = 43/60 (71%)
Frame = +3
Query: 327 FSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 506
F+ H RRIR ++ G V ILLAGRH KRVV + L SGLLLVTGPF +N PLRR+ QR
Sbjct: 86 FADHRRRIRKSITPGKVLILLAGRHRAKRVVFLKSLASGLLLVTGPFKYNGVPLRRVNQR 145
Score = 40.3 bits (90), Expect = 0.045
Identities = 23/78 (29%), Positives = 35/78 (44%)
Frame = +2
Query: 464 FCFQFVPATPYSSALVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFA 643
F + VP + VI T TRI + N K+P ND++F D IFA
Sbjct: 132 FKYNGVPLRRVNQRYVIATKTRIKIKNIKIPSQLNDEFFRRQDLKTKKSV-----DKIFA 186
Query: 644 TKKEKYVPLSSAKPIRRQ 697
+++KY K +++Q
Sbjct: 187 EEEKKYTVSDDRKKLQKQ 204
>UniRef50_Q4N3I8 Cluster: 60S ribosomal protein L6e, putative; n=3;
Piroplasmida|Rep: 60S ribosomal protein L6e, putative -
Theileria parva
Length = 212
Score = 74.9 bits (176), Expect = 2e-12
Identities = 42/84 (50%), Positives = 54/84 (64%)
Frame = +3
Query: 255 VPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGIL 434
V L RRK+ K + GR ++ V ++R +LK G V ILL G + GKRVVL+ +L
Sbjct: 12 VKLNRRKTVVTRLGKTKVV--GRKYAS-VPKVRESLKPGAVLILLTGSYKGKRVVLLKVL 68
Query: 435 PSGLLLVTGPFAFNSCPLRRIPQR 506
SGLLLVTGPF+FN PLRR+ R
Sbjct: 69 KSGLLLVTGPFSFNGVPLRRVNSR 92
>UniRef50_Q1DRV0 Cluster: 60S ribosomal protein L6; n=15;
Pezizomycotina|Rep: 60S ribosomal protein L6 -
Coccidioides immitis
Length = 206
Score = 72.5 bits (170), Expect = 9e-12
Identities = 35/83 (42%), Positives = 53/83 (63%)
Frame = +3
Query: 258 PLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILP 437
P ++ + +YP ++ + + + H ++RP+L+ GT+ ILLAGR GKRV+L+ L
Sbjct: 26 PSQKAQKWYPADDEPQPKKARK--TAHPTKLRPSLQPGTILILLAGRFRGKRVILLKHLG 83
Query: 438 SGLLLVTGPFAFNSCPLRRIPQR 506
G+LLVTGPF N PLRR+ R
Sbjct: 84 QGVLLVTGPFKLNGVPLRRVNAR 106
>UniRef50_Q9C9C6 Cluster: 60S ribosomal protein L6-2; n=11;
Eukaryota|Rep: 60S ribosomal protein L6-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 233
Score = 69.7 bits (163), Expect = 6e-11
Identities = 37/84 (44%), Positives = 53/84 (63%)
Frame = +3
Query: 252 NVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGI 431
+ P+++ FYP ++ ++ R +K + +R ++ GTV I+LAGR GKRVV +
Sbjct: 55 DAPVEKPPKFYPAED-VKKPLPNRRTAKPAK-LRASITPGTVLIILAGRFKGKRVVFLKQ 112
Query: 432 LPSGLLLVTGPFAFNSCPLRRIPQ 503
L SGLLLVTGPF N PLRR+ Q
Sbjct: 113 LASGLLLVTGPFKINGVPLRRVNQ 136
>UniRef50_Q7XY83 Cluster: 60S ribosomal protein L6; n=1; Griffithsia
japonica|Rep: 60S ribosomal protein L6 - Griffithsia
japonica (Red alga)
Length = 216
Score = 69.3 bits (162), Expect = 9e-11
Identities = 38/88 (43%), Positives = 52/88 (59%)
Frame = +3
Query: 243 GNQNVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 422
G + VP K+ +YP +K + K + +RP++K GT+ ILLAG G RVV+
Sbjct: 34 GYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTK-LRPSIKSGTIVILLAGVFRGSRVVV 92
Query: 423 VGILPSGLLLVTGPFAFNSCPLRRIPQR 506
+ L SG LLVTGP+A N PL R+ QR
Sbjct: 93 LKQLDSGQLLVTGPYAVNRIPLTRVDQR 120
>UniRef50_Q5CM54 Cluster: 60S ribosomal protein L6; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L6 -
Cryptosporidium hominis
Length = 184
Score = 68.5 bits (160), Expect = 1e-10
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +3
Query: 303 RASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSC 482
R S R S ++R +L+ G VCILLAG + GKRVV++ LPSGL++VTGP+A N
Sbjct: 20 RKYSSRRKASVVAPKLRSSLQPGVVCILLAGPYKGKRVVMLKALPSGLVVVTGPYALNGV 79
Query: 483 PLRRI 497
P+RR+
Sbjct: 80 PVRRV 84
>UniRef50_A7L698 Cluster: 60S ribosomal protein L6; n=1; Artemia
franciscana|Rep: 60S ribosomal protein L6 - Artemia
sanfranciscana (Brine shrimp) (Artemia franciscana)
Length = 241
Score = 68.5 bits (160), Expect = 1e-10
Identities = 37/88 (42%), Positives = 53/88 (60%)
Frame = +3
Query: 243 GNQNVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVL 422
G + V ++ FYP + + +K+ +IR +L+ GT+ ILLAG + GKRVVL
Sbjct: 56 GTRLVSTRKPPQFYPINSRQKRFHRRLVNNKNPPKIRKSLQPGTILILLAGVNRGKRVVL 115
Query: 423 VGILPSGLLLVTGPFAFNSCPLRRIPQR 506
+ L SGLLLV+GP N PLRR+ Q+
Sbjct: 116 LKALKSGLLLVSGPLKVNRVPLRRVHQK 143
Score = 50.0 bits (114), Expect = 6e-05
Identities = 29/68 (42%), Positives = 34/68 (50%)
Frame = +2
Query: 479 VPATPYSSALVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEK 658
VP LVI TSTRI + N K+P+H ND YF EG DIFA+K E+
Sbjct: 135 VPLRRVHQKLVIATSTRIDISNVKVPEHINDTYF----RRHKVKKEAKEG-DIFASKPER 189
Query: 659 YVPLSSAK 682
Y P K
Sbjct: 190 YTPTEQRK 197
>UniRef50_Q01IK4 Cluster: 60S ribosomal protein L6; n=17;
Eukaryota|Rep: 60S ribosomal protein L6 - Oryza sativa
(Rice)
Length = 222
Score = 66.9 bits (156), Expect = 5e-10
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = +3
Query: 279 FYPTQE-KIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLV 455
FYP + K R S +P + ++R ++ GTV ILLAGR GKRVV + L SGLLLV
Sbjct: 53 FYPADDVKPRQPSTRKP---NPTKLRSSITPGTVLILLAGRFMGKRVVFLKQLKSGLLLV 109
Query: 456 TGPFAFNSCPLRRIPQ 503
TGPF N P+RR+ Q
Sbjct: 110 TGPFKINGVPIRRVNQ 125
>UniRef50_Q54D63 Cluster: 60S ribosomal protein L6; n=2;
Eukaryota|Rep: 60S ribosomal protein L6 - Dictyostelium
discoideum AX4
Length = 236
Score = 65.7 bits (153), Expect = 1e-09
Identities = 32/53 (60%), Positives = 39/53 (73%)
Frame = +3
Query: 348 IRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 506
+R ++ GTV I+LAGR AGKRVV + L SGL+L+TGPF N PLRRI QR
Sbjct: 87 LRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFKVNGVPLRRIDQR 139
>UniRef50_Q7SH22 Cluster: 60S ribosomal protein L6; n=2;
Sordariaceae|Rep: 60S ribosomal protein L6 - Neurospora
crassa
Length = 207
Score = 64.1 bits (149), Expect = 3e-09
Identities = 35/64 (54%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Frame = +3
Query: 321 RPFSKHVRRIRPNLKI--GTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRR 494
RP K +R P + GTV ILLAGR GKRVVL+ L G+LLVTGPF N PLRR
Sbjct: 24 RPVRKTIRPWSPRSTLVPGTVLILLAGRFRGKRVVLLKALDQGVLLVTGPFKINGVPLRR 83
Query: 495 IPQR 506
+ R
Sbjct: 84 VNAR 87
>UniRef50_P47991 Cluster: 60S ribosomal protein L6; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L6 -
Caenorhabditis elegans
Length = 217
Score = 62.5 bits (145), Expect = 1e-08
Identities = 34/53 (64%), Positives = 37/53 (69%), Gaps = 1/53 (1%)
Frame = +3
Query: 348 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQ 503
+R L GTV I+LAGRH GKRVV + LP SGLLLVTGP N PLRRI Q
Sbjct: 67 LRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQ 119
Score = 35.9 bits (79), Expect = 0.97
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +2
Query: 482 PATPYSSALVIGTSTRISLGNFKLPKHFNDDYFXXXXXXXXXXXXXXEGDDIFATKKEKY 661
P A VI TS ++++ K+P+H ND+YF G +IFA+ K +Y
Sbjct: 113 PLRRIGQAFVIATSLKVNVSGVKIPEHINDEYF------KRKSTAQKTGKNIFASGKTEY 166
>UniRef50_Q4X638 Cluster: 60S ribosomal subunit protein L6e,
putative; n=5; Plasmodium|Rep: 60S ribosomal subunit
protein L6e, putative - Plasmodium chabaudi
Length = 241
Score = 60.9 bits (141), Expect = 3e-08
Identities = 24/55 (43%), Positives = 38/55 (69%)
Frame = +3
Query: 342 RRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 506
R++R ++++G V I+L G+H GKR ++ +L SGLL V GP+ N PL+R+ R
Sbjct: 68 RKMRSSIQVGKVAIILTGKHMGKRCIIAKVLKSGLLAVVGPYEVNGVPLKRVDPR 122
>UniRef50_A0CYT3 Cluster: 60S ribosomal protein L6; n=5;
Oligohymenophorea|Rep: 60S ribosomal protein L6 -
Paramecium tetraurelia
Length = 208
Score = 57.2 bits (132), Expect = 4e-07
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Frame = +3
Query: 249 QNVPLKRRK----SFYPTQEK----IRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHA 404
Q++P K+R ++Y + ++ +R RP + +R+I P G V ILL+GR
Sbjct: 19 QSMPAKKRSVRIGNWYKSDDEKVHFVRKRKAPRPAT--LRKIVP----GQVLILLSGRFQ 72
Query: 405 GKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 497
GKRVV + L SGLLLVTGPF N PL+R+
Sbjct: 73 GKRVVFLKQLKSGLLLVTGPFKINGVPLKRV 103
>UniRef50_Q02326 Cluster: 60S ribosomal protein L6-A; n=16;
Dikarya|Rep: 60S ribosomal protein L6-A - Saccharomyces
cerevisiae (Baker's yeast)
Length = 176
Score = 56.8 bits (131), Expect = 5e-07
Identities = 32/81 (39%), Positives = 49/81 (60%)
Frame = +3
Query: 264 KRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSG 443
++ +YP+++ + A R ++ +++R +L GTV ILLAGR GKRVV + L
Sbjct: 4 QKAPKWYPSED-VAALKKTRKAARP-QKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 444 LLLVTGPFAFNSCPLRRIPQR 506
LL++GPF N PLRR+ R
Sbjct: 62 TLLISGPFKVNGVPLRRVNAR 82
>UniRef50_UPI0000DA1E66 Cluster: PREDICTED: similar to ribosomal
protein L6; n=5; Eutheria|Rep: PREDICTED: similar to
ribosomal protein L6 - Rattus norvegicus
Length = 112
Score = 56.4 bits (130), Expect = 6e-07
Identities = 37/85 (43%), Positives = 43/85 (50%)
Frame = +3
Query: 372 TVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR**SAPPPEFHSATSN 551
TV I+L GRH GKRVV + L SGLLLVTGP A N PL R+ Q S F
Sbjct: 13 TVLIILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLCRMHQ---SVVISTFTKVDIC 69
Query: 552 CQNTSMMITSRRIRSASNVQSNAKR 626
TS +T + S Q+ A R
Sbjct: 70 KVKTSKHLTDASFKKQSAAQAQAPR 94
>UniRef50_Q4Q4D3 Cluster: 60S ribosomal protein L6, putative; n=11;
Trypanosomatidae|Rep: 60S ribosomal protein L6, putative
- Leishmania major
Length = 195
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +3
Query: 348 IRPNLKIGTVCILLAGRHAGKRVVLVGILP-SGLLLVTGPFAFNSCPLRRIPQR 506
+R + G + I+LAGR G+R V++ LP +G L+V+GP +N P+RRI R
Sbjct: 29 LRKSCAPGAIAIILAGRFRGRRAVILKQLPHNGPLVVSGPMKYNGVPIRRIDSR 82
>UniRef50_A2EBD1 Cluster: 60S ribosomal protein L6, putative; n=7;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L6,
putative - Trichomonas vaginalis G3
Length = 151
Score = 44.4 bits (100), Expect = 0.003
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +3
Query: 351 RPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGP 464
RP+LK+GTV I++ G H GKR V+V +G++ + GP
Sbjct: 53 RPSLKVGTVVIVVGGEHQGKRAVVVADQGAGIVKIAGP 90
>UniRef50_A5C5P0 Cluster: 60S ribosomal protein L6; n=1; Vitis
vinifera|Rep: 60S ribosomal protein L6 - Vitis vinifera
(Grape)
Length = 249
Score = 39.9 bits (89), Expect = 0.060
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +3
Query: 408 KRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQ 503
KRVV + L SGLLL+TG F N PLRR+ Q
Sbjct: 156 KRVVFLKQLSSGLLLITGSFKINGVPLRRVNQ 187
>UniRef50_Q7QVA1 Cluster: 60S ribosomal protein L27; n=1; Giardia
lamblia ATCC 50803|Rep: 60S ribosomal protein L27 -
Giardia lamblia ATCC 50803
Length = 135
Score = 39.9 bits (89), Expect = 0.060
Identities = 17/29 (58%), Positives = 22/29 (75%)
Frame = +3
Query: 351 RPNLKIGTVCILLAGRHAGKRVVLVGILP 437
+P +K G VCI+L GRHAGK+ V+V LP
Sbjct: 3 QPIIKPGLVCIVLQGRHAGKKAVIVEALP 31
>UniRef50_Q8U2L5 Cluster: 50S ribosomal protein L14e; n=5;
Archaea|Rep: 50S ribosomal protein L14e - Pyrococcus
furiosus
Length = 83
Score = 39.9 bits (89), Expect = 0.060
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +3
Query: 354 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 497
P + +G + +++AGR AG++VV+V I+ +LVTG N RR+
Sbjct: 2 PAIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRM 48
>UniRef50_P54054 Cluster: 50S ribosomal protein L14e; n=8;
Euryarchaeota|Rep: 50S ribosomal protein L14e -
Methanococcus jannaschii
Length = 80
Score = 39.5 bits (88), Expect = 0.079
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +3
Query: 354 PNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 497
P +++G VCI AGR AGK V+V IL ++V G C ++ +
Sbjct: 2 PAIEVGRVCIKTAGREAGKVCVIVDILDKNFVIVDGLVKRRRCNIKHL 49
>UniRef50_A7QIH5 Cluster: Chromosome chr12 scaffold_103, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr12 scaffold_103, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 345
Score = 39.1 bits (87), Expect = 0.10
Identities = 26/69 (37%), Positives = 39/69 (56%)
Frame = +3
Query: 279 FYPTQEKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVT 458
FYP + ++ + +K ++ +R ++ GTV I+LAGR VV + L SGLLL+T
Sbjct: 207 FYPADD-VKKPLINKHKAKPIK-LRASITPGTVLIILAGR-----VVFLKQLSSGLLLIT 259
Query: 459 GPFAFNSCP 485
G F N P
Sbjct: 260 GSFKINDVP 268
>UniRef50_UPI0000DC20AA Cluster: UPI0000DC20AA related cluster; n=2;
Rattus norvegicus|Rep: UPI0000DC20AA UniRef100 entry -
Rattus norvegicus
Length = 261
Score = 37.5 bits (83), Expect = 0.32
Identities = 24/61 (39%), Positives = 33/61 (54%)
Frame = +3
Query: 324 PFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRIPQ 503
P KH + + N TV I++ G+H +RVV + L G LL+TGP A N L R Q
Sbjct: 123 PAFKHEKAVC-NSTPETVLIIITGQH--RRVVFLKQLSRGFLLITGPLALNLVLLYRTHQ 179
Query: 504 R 506
+
Sbjct: 180 K 180
>UniRef50_Q8SR91 Cluster: 60S RIBOSOMAL PROTEIN L6; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L6 -
Encephalitozoon cuniculi
Length = 155
Score = 37.5 bits (83), Expect = 0.32
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +3
Query: 294 EKIRASSGGRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAF 473
EK +A + +P VRR +L G V ++L G A +RVV + L + L GP +
Sbjct: 10 EKYKARTARKP---RVRRT--DLVKGMVVVVLEGVFASRRVVYLKGLEDNIALCAGPKSI 64
Query: 474 NSCPLRRIPQR 506
N PL RI +R
Sbjct: 65 NGIPLFRIDER 75
>UniRef50_Q8ZYB4 Cluster: 50S ribosomal protein L14e; n=14;
Archaea|Rep: 50S ribosomal protein L14e - Pyrobaculum
aerophilum
Length = 103
Score = 35.5 bits (78), Expect = 1.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 360 LKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFNSCPLRRI 497
+ IG V + + GR AG++ V+V I+ +++TGP RR+
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRV 50
>UniRef50_A7ET80 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 752
Score = 34.3 bits (75), Expect = 3.0
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +3
Query: 246 NQNVPLKRRKSFYPTQEKIRASSGGRPFSKHVRRIRPNLK 365
N+ LK SF P + + ASS GRP K +R+R LK
Sbjct: 132 NREEELKAMVSFMPHRPAVDASSSGRPMKKDSKRMRNGLK 171
>UniRef50_Q4ZTN3 Cluster: Sensor protein; n=5; Pseudomonas|Rep:
Sensor protein - Pseudomonas syringae pv. syringae
(strain B728a)
Length = 676
Score = 33.9 bits (74), Expect = 3.9
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +3
Query: 318 GRPFSKHVRRIRPNLKIGTVCILLAGRHAGKRVVLVGILPSGLLLVTGPFAFN 476
GR ++ R++RP LK+ + + G +A V G L +G+ L+T PFAF+
Sbjct: 617 GRQLAEIARQLRPELKV----LFITG-YAEHAAVRGGFLDTGMQLITKPFAFD 664
>UniRef50_Q5KML3 Cluster: VpsB, putative; n=2; Basidiomycota|Rep:
VpsB, putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 686
Score = 33.5 bits (73), Expect = 5.2
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = -2
Query: 433 RIPTSTTLLPACLPARRMQTVPIFRLGRILRTCLLNGRPPDEARI 299
R+P+ L A L A R Q P ++ +++ T + NG PP+ AR+
Sbjct: 397 RVPSPNKLRLAILYALRYQKSPSAQIPQVVSTLISNGVPPERARL 441
>UniRef50_A2RKU3 Cluster: Cation-transporting ATPase; n=2;
Lactococcus lactis subsp. cremoris|Rep:
Cation-transporting ATPase - Lactococcus lactis subsp.
cremoris (strain MG1363)
Length = 841
Score = 32.7 bits (71), Expect = 9.0
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +3
Query: 411 RVVLVGILPSGLLLVTGPFAFNSCPLRRIPQR 506
+++++GI+P +L++ F F+S L IPQR
Sbjct: 215 KIIVIGIIPISILVLLNQFVFSSLDLSVIPQR 246
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,633,585
Number of Sequences: 1657284
Number of extensions: 12999610
Number of successful extensions: 33951
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 32557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33913
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -