Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30140X
(301 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1351 - 35855543-35856751 29 0.67
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580... 27 2.1
05_03_0460 - 14294931-14295110,14295200-14295234,14295358-142954... 27 2.7
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938... 27 3.6
11_01_0802 - 7115854-7116778,7117087-7117211,7118947-7119426,712... 27 3.6
07_01_0182 + 1280479-1280754,1281232-1282089 27 3.6
06_02_0107 - 11904636-11904699,11904940-11905013,11905671-119058... 27 3.6
01_06_0384 + 28906632-28907333 27 3.6
01_06_0187 - 27296834-27296980,27297567-27297731,27297820-272979... 27 3.6
11_06_0445 - 23679918-23680282,23680415-23683349 26 4.7
11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911... 26 4.7
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704... 26 4.7
09_04_0210 + 15644151-15644609 26 6.3
05_05_0224 - 23427375-23427543,23428152-23428384 26 6.3
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974... 26 6.3
01_05_0592 - 23483834-23484285,23484357-23484455,23484534-234847... 26 6.3
12_02_0726 - 22552005-22552035,22552507-22552598,22552970-225530... 25 8.3
12_02_0229 - 15940144-15940451,15940879-15941380,15941594-159417... 25 8.3
09_04_0414 - 17393780-17394826 25 8.3
06_03_0673 + 23394027-23394094,23394267-23394539,23394613-233949... 25 8.3
>02_05_1351 - 35855543-35856751
Length = 402
Score = 29.1 bits (62), Expect = 0.67
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 162 LQNVRDDLVVPHHPILSNPFLQNNQPFLK 76
L RD ++ PHHP++ L N P+L+
Sbjct: 113 LSPTRDMVIKPHHPLVDRSGLVANAPYLR 141
>03_05_0725 +
27155736-27155746,27155798-27155949,27156108-27158068,
27159169-27159397,27159506-27159634,27159725-27159838,
27160059-27160258,27160301-27160599,27160713-27160923,
27161017-27161172,27161290-27161447,27161532-27161724,
27162015-27162406,27162537-27162717,27162802-27163031,
27163108-27163753,27163833-27163902,27163994-27164244
Length = 1860
Score = 27.5 bits (58), Expect = 2.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 176 FWLRSNWCSGVAKLTSGCIER 238
FW+R W SG L+S C E+
Sbjct: 494 FWIRFFWLSGCLSLSSDCKEK 514
>05_03_0460 -
14294931-14295110,14295200-14295234,14295358-14295457,
14295548-14295669,14296272-14296367,14296489-14298949
Length = 997
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = +3
Query: 27 SLHYSHFINNFRSTFHT*EMAGYFEEMGWRELGDGEQPNHLLHFARFLIDSGLDRTG 197
++ Y+ FIN R YFEEM + G LL+F FLI +G G
Sbjct: 720 NIAYTAFINGLRKCGRIETALTYFEEMVTK--GFELDTFSLLYFINFLISNGYPMKG 774
>11_04_0091 -
13392864-13392950,13393534-13393579,13393706-13393819,
13394135-13394256,13394360-13394431,13395663-13395812,
13399258-13399341,13399459-13399560,13399634-13399671,
13399762-13399864,13399978-13400389,13400493-13400671
Length = 502
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 280 LWISYYNICNFCTASFDAAGGKLGHSAAPVRSKP 179
LWI+ N C+ +A F G L H +P + P
Sbjct: 90 LWINGGNRCSVLSALFFEIGENLNHHRSPAGAPP 123
>11_01_0802 -
7115854-7116778,7117087-7117211,7118947-7119426,
7120005-7120222,7120351-7120441
Length = 612
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 143 SSLTFCKISHRFWLRSNWCSGVAKLTSG 226
+S+T+C S F+L S S V K+TSG
Sbjct: 504 TSMTYCSYSFGFYLSSLLVSLVNKVTSG 531
>07_01_0182 + 1280479-1280754,1281232-1282089
Length = 377
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 99 EEMGWRELGDGEQPNHLL 152
EE R LGDGE P HL+
Sbjct: 71 EEDAARALGDGEHPRHLI 88
>06_02_0107 - 11904636-11904699,11904940-11905013,11905671-11905802,
11910309-11911018,11911110-11911852,11911936-11913753,
11914037-11914338
Length = 1280
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 197 CSGVAKLTSGCIERGSTKITDVVIGNPKE 283
C V K S C RG ++TD V NP+E
Sbjct: 1229 CDNVPKQFSACARRGQKQMTDQV--NPEE 1255
>01_06_0384 + 28906632-28907333
Length = 233
Score = 26.6 bits (56), Expect = 3.6
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = +1
Query: 88 LVILKKWV--GENWVMGNNQIISY 153
L+ +K+W+ G WV+GN + IS+
Sbjct: 67 LLNIKRWMSFGSEWVLGNGESISF 90
>01_06_0187 -
27296834-27296980,27297567-27297731,27297820-27297918,
27299276-27299616,27299824-27300643
Length = 523
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -2
Query: 198 HQFDLSQNL*EILQNVRDDLVVPHHPILSNPFLQNN 91
++F L + + N PHHP+L+NP N
Sbjct: 345 NRFHLGPRIPVLFSNSERTFGPPHHPLLANPVNHRN 380
>11_06_0445 - 23679918-23680282,23680415-23683349
Length = 1099
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/46 (39%), Positives = 21/46 (45%)
Frame = +2
Query: 104 NGLERIG*WGTTKSSLTFCKISHRFWLRSNWCSGVAKLTSGCIERG 241
N LE G W T SSLT C WL N GV + G + +G
Sbjct: 418 NKLES-GDW-TFMSSLTNCTQLQNLWLGGNNLQGVLPTSIGNLSKG 461
>11_04_0442 - 17790811-17790889,17791047-17791114,17791144-17791166,
17791210-17795913,17797414-17797624,17798478-17798666
Length = 1757
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 128 WGTTKSSLTFCKISHRFW--LRSNWCSGVAKLTSGCIE 235
W ++ S L+ S FW + +NW + KL SGCI+
Sbjct: 1418 WESSVSELSKADCS-AFWKFVATNWGQNMNKLLSGCIK 1454
>03_02_0275 +
7042433-7042732,7042864-7043140,7043751-7044231,
7044943-7045491,7045556-7045680,7045824-7045966
Length = 624
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 114 RELGDGEQPNHLLHFARFLIDSGLDRTGAAEW-PSLP 221
R+L + ++P+ F RFL++S ++ +W PS P
Sbjct: 227 RKLVNAKRPDIAERFERFLLESYIEDNDTVKWCPSTP 263
>09_04_0210 + 15644151-15644609
Length = 152
Score = 25.8 bits (54), Expect = 6.3
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Frame = -1
Query: 259 ICNFCTASFDAAGGKLGHSAAP--VRSKPESMRNLAKCKR*FGCSPSPNSLQPISSK*PA 86
+C +C FD++ GH A RS + R +A R G P+ + PA
Sbjct: 35 LCMYCDRKFDSSQALGGHQNAHKYERSLAKRRREIAAALRAHGAPPAADGAGAARYSSPA 94
Query: 85 ISQ 77
+Q
Sbjct: 95 AAQ 97
>05_05_0224 - 23427375-23427543,23428152-23428384
Length = 133
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = -2
Query: 279 FGFPITTSVIFVLPLSMQPEVSLATPLHQFDL 184
FGF +T ++ ++P ++ ++ LA L +FDL
Sbjct: 28 FGFSVT--ILSIIPFFLKLQIYLAVSLAKFDL 57
>01_06_1760 -
39697079-39697162,39697280-39697340,39697415-39697479,
39697579-39697860,39697938-39698012,39698121-39698195,
39698343-39698399,39698653-39698726,39698912-39699055,
39699608-39699662,39700027-39700149,39700276-39700320,
39701068-39701160,39701249-39701662
Length = 548
Score = 25.8 bits (54), Expect = 6.3
Identities = 6/14 (42%), Positives = 11/14 (78%)
Frame = +1
Query: 82 KWLVILKKWVGENW 123
+WL++ W+G+NW
Sbjct: 269 EWLILSTWWIGDNW 282
>01_05_0592 -
23483834-23484285,23484357-23484455,23484534-23484702,
23485049-23485363,23485561-23485767,23485852-23486106,
23486575-23486736
Length = 552
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 195 QFDLSQNL*EILQNVRDDLVVPHHPILSNPFLQNNQP 85
QFD+ N + L+ RD++ P++ F NN P
Sbjct: 411 QFDVLVNKIKKLEGARDEVANAATPLIQAMFFNNNGP 447
>12_02_0726 -
22552005-22552035,22552507-22552598,22552970-22553094,
22553221-22553311,22553475-22553755,22554211-22554394,
22554499-22554583,22554692-22554782,22554909-22555293,
22555457-22555669,22555873-22556418,22556572-22556788,
22556907-22557058,22557519-22557663,22557846-22557907,
22559130-22559291,22559393-22559482,22560055-22560215,
22560907-22560997,22561125-22561308,22561556-22561737,
22561857-22562086,22562622-22562685
Length = 1287
Score = 25.4 bits (53), Expect = 8.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 201 AEWPSLPPAASKEAVQK 251
A WPS+PP +S E + K
Sbjct: 421 ATWPSIPPDSSAETMAK 437
>12_02_0229 -
15940144-15940451,15940879-15941380,15941594-15941727,
15941954-15942238,15942965-15943463,15944064-15944350,
15944702-15944801
Length = 704
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -2
Query: 234 SMQPEVSLATPLHQFDLSQNL*EILQNVRDDLVVPHHPILSNPFLQNNQPFLK 76
S+ PE+ + F+L+ E + +R + P+H + NP N F K
Sbjct: 365 SVVPEIQTKPGIFTFNLTW---EEISTLRPKITHPYHDFVRNPRYANQGKFFK 414
>09_04_0414 - 17393780-17394826
Length = 348
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 277 WISYYNICNFCTASFDAAGGKLGHSAAPVRSKPESMRNLAKCK 149
W+S Y + + D+AGG + H+ A +R+ E + A+ K
Sbjct: 176 WVSQYGDLSRLFLAGDSAGGNIAHNLA-LRAGEEGLDGGARIK 217
>06_03_0673 +
23394027-23394094,23394267-23394539,23394613-23394958,
23395031-23395168,23395260-23395385,23395464-23395652,
23395723-23396202,23396274-23397236
Length = 860
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 84 MAGYFEEMGWRELGDGEQPNHLLHFARFLIDSGL 185
+A FEE G R GDG P+ + AR L+ +
Sbjct: 491 IASAFEEQGRRRGGDGGSPDATVAPARSLLKEAI 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,355,596
Number of Sequences: 37544
Number of extensions: 190848
Number of successful extensions: 542
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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