Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30140X
(301 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_34769| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_55019| Best HMM Match : YibE_F (HMM E-Value=0.85) 27 2.8
SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0) 26 4.9
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 26 4.9
SB_34407| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_19559| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051) 26 6.5
SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039) 26 6.5
SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20) 26 6.5
SB_9583| Best HMM Match : GLTT (HMM E-Value=2.3) 25 8.6
>SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 381
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 211 QAYLRLHRKRQYKNYRCCNRKSKGRVP 291
++YLRL K YKNY SKG++P
Sbjct: 52 ESYLRL-AKIPYKNYFSSTSSSKGKIP 77
>SB_34769| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 16 ILLNHYITLIL*IIFVPHSILEKWLVILKKWVGENWVMG 132
++LN + +L I +P + KW + +KW G WV G
Sbjct: 67 LILNMALGDLLLTIDIPFIV--KWFFVHEKWFGGRWVGG 103
>SB_37778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 312
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = -3
Query: 206 LRCTSSI*ARIYEKSCKM*EMIWLFPITQFSPTHFFKITS 87
L+ TSS+ ++ ++ ++ W P+ + PTHF +TS
Sbjct: 57 LKATSSVTVQLGVSLHQIIDLKWNNPLLTWDPTHFGNLTS 96
>SB_55019| Best HMM Match : YibE_F (HMM E-Value=0.85)
Length = 329
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 16 ILLNHYITLIL*IIFVPHSILEKWLVILKKWV 111
I+LNH++ L I F PH+ + +L + WV
Sbjct: 43 IILNHFLVLYENIKFSPHAFVLAYLPAVLFWV 74
>SB_38551| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
Length = 1357
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 72 HT*EMAGYFEEMGWRELGDGEQPNHLLHFARFLIDSGLDRTGAAEWPSLP 221
HT +M ++ GWR G G NH F R D+ ++++ W ++P
Sbjct: 1295 HTAKMTSPVDD-GWRTNGAGLHFNHKFGFGRLDADAMVEKSRV--WKNVP 1341
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +1
Query: 73 ILEKWLVILKKWVGEN--WVMGNNQ 141
I KW+VI KWV N WV N++
Sbjct: 417 IRNKWVVIRNKWVDRNSKWVDRNSR 441
>SB_34407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 128 WGTTKSSLTFCKISHRFW 181
WG T +SL F ++ H FW
Sbjct: 132 WGRTPASLRFGEVYHFFW 149
>SB_19559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 158 CKISHRFWLRSNWCSGVAKLTSGCIERGSTKITD 259
C++ RF +NW S V + +E G TKI D
Sbjct: 629 CRVEVRFE-HTNWLSNVIVVCLRVLELGETKICD 661
>SB_50181| Best HMM Match : zf-C2H2 (HMM E-Value=0.0051)
Length = 503
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 282 SFGFPITTSVIFVLPLSMQPEV 217
+FG P+ TSVI +PL+ P++
Sbjct: 86 AFGEPLRTSVIHEVPLTSSPDL 107
>SB_22908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 769
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 70 SILEKWLVILKKWVGENWVMGN 135
+I + W+ +LK E+WVMG+
Sbjct: 538 AIPDMWIKVLKSLKDEDWVMGD 559
>SB_10216| Best HMM Match : RVT_1 (HMM E-Value=0.00039)
Length = 566
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 217 KLGHSAAPVRSKPESMR 167
KLGH A P+R KP S R
Sbjct: 264 KLGHLAKPLRKKPFSRR 280
>SB_149| Best HMM Match : rve (HMM E-Value=6.3e-20)
Length = 2232
Score = 25.8 bits (54), Expect = 6.5
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -2
Query: 246 VLPLSMQPEVSLATPLHQFDLSQNL*EILQNVRDDLVVPHHPILSNPFLQNNQPFLKYG 70
+LP ++Q V T LH + ++ N R H P+ PF+ + P KYG
Sbjct: 1257 ILPYTIQRNVDRRT-LHTVPTKKTF-RVVYNKRGAQRDAHVPVWPPPFVGSRVPVKKYG 1313
>SB_9583| Best HMM Match : GLTT (HMM E-Value=2.3)
Length = 586
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 123 PILSNPFLQNNQPFLKYGMWNENYL*NE 40
P+L P +NN+ Y + ENYL NE
Sbjct: 132 PVLLRPAKENNKSAKDYPVVIENYLVNE 159
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,652,511
Number of Sequences: 59808
Number of extensions: 209904
Number of successful extensions: 514
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 513
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 352102492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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