Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30140X
         (301 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73104-3|CAA97432.1|  334|Caenorhabditis elegans Hypothetical pr...    27   3.3  
Z22178-6|CAA80158.2|  265|Caenorhabditis elegans Hypothetical pr...    26   4.4  
AF016665-2|AAC71181.1|  662|Caenorhabditis elegans Hypothetical ...    26   4.4  
Z32683-10|CAA83625.1|  381|Caenorhabditis elegans Hypothetical p...    25   7.6  
U13876-17|AAA21167.1|  253|Caenorhabditis elegans Hypothetical p...    25   7.6  
AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine re...    25   7.6  

>Z73104-3|CAA97432.1|  334|Caenorhabditis elegans Hypothetical
           protein K08D8.5 protein.
          Length = 334

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 117 LSNPFLQNNQPFLKYGMWNEN 55
           L NPFL  ++P+   G W EN
Sbjct: 36  LINPFLNLSEPYYYPGTWREN 56


>Z22178-6|CAA80158.2|  265|Caenorhabditis elegans Hypothetical
           protein F54C8.6 protein.
          Length = 265

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/19 (63%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
 Frame = +3

Query: 108 GWRELGD--GEQPNHLLHF 158
           G+ ELG+  GE  NHLLHF
Sbjct: 206 GFHELGENLGENINHLLHF 224


>AF016665-2|AAC71181.1|  662|Caenorhabditis elegans Hypothetical
           protein C49D10.8 protein.
          Length = 662

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -2

Query: 285 PSFGFPITTSVIFVLPLSMQPEVSLATPLHQFDLSQNL*EILQNVRDDLVV 133
           P +GF  T  +    PLS +PE     P++Q  +   + + + N++  L +
Sbjct: 503 PDYGFIFTRHMTIGDPLSQEPESFDEDPIYQI-MKAQMFKFVSNIKHKLYI 552


>Z32683-10|CAA83625.1|  381|Caenorhabditis elegans Hypothetical
           protein R07E5.3 protein.
          Length = 381

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +1

Query: 214 AYLRLHRKRQYKNYRCCNRK 273
           AYLRLHR   YK Y    RK
Sbjct: 36  AYLRLHRGTLYKKYPLLWRK 55


>U13876-17|AAA21167.1|  253|Caenorhabditis elegans Hypothetical
           protein F57B9.1 protein.
          Length = 253

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = -2

Query: 162 LQNVRDDLVVPHHPILSNPFLQNNQPFLKYGMWNEN 55
           +QN+R   +  H P L    L    PF  + +W  N
Sbjct: 35  IQNIRAKYLNSHDPYLLESKLPTTSPFELFDIWFRN 70


>AF038608-4|AAU05594.2|  310|Caenorhabditis elegans Serpentine
           receptor, class z protein37 protein.
          Length = 310

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 110 THFFKITSHFSSMECGTKIIYKMRVM 33
           T  F ITSHF  M   T +++ M+++
Sbjct: 48  TALFPITSHFYKMVRTTNVLFLMQIL 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,078,654
Number of Sequences: 27780
Number of extensions: 165570
Number of successful extensions: 431
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)