Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30140X
         (301 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g44470.1 68416.m04780 hypothetical protein                          29   0.58 
At3g19210.1 68416.m02438 DNA repair protein RAD54, putative simi...    28   1.3  
At4g04790.1 68417.m00701 pentatricopeptide (PPR) repeat-containi...    27   2.3  
At5g46380.1 68418.m05708 hypothetical protein                          26   4.1  
At4g33710.1 68417.m04787 pathogenesis-related protein, putative ...    26   4.1  
At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family pr...    26   5.4  
At2g27700.1 68415.m03356 eukaryotic translation initiation facto...    26   5.4  
At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR ...    25   7.1  
At5g05630.1 68418.m00614 amino acid permease family protein weak...    25   7.1  
At1g61490.1 68414.m06928 S-locus protein kinase, putative simila...    25   7.1  
At1g05930.1 68414.m00622 hypothetical protein contains Pfam prof...    25   7.1  
At1g56570.1 68414.m06506 pentatricopeptide (PPR) repeat-containi...    25   9.4  

>At3g44470.1 68416.m04780 hypothetical protein
          Length = 135

 Score = 29.1 bits (62), Expect = 0.58
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 282 SFGFPITTSVIFVLPLSMQPEVSLATPLHQFDLSQNL*EILQNVRD-DLVVPHHPILSNP 106
           S+    T++ I   PL ++ +  LAT +H+F  S  L ++   V    + V      SNP
Sbjct: 47  SYKLVSTSTTIQSHPLYIRNDRQLATFMHKFSQSGGLLQLCLTVEQISVTVEQAETTSNP 106

Query: 105 FLQNNQP 85
           F+ ++ P
Sbjct: 107 FVSHSVP 113


>At3g19210.1 68416.m02438 DNA repair protein RAD54, putative similar
           to RAD54 GB:CAA71278 from [Drosophila melanogaster]
           (Mol. Cell. Biol.(1997) 17 (10), 6097-6104)
          Length = 852

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 52  IIFVPHSILEKWLVILKKWVGE 117
           II  P S++  W   +KKWVG+
Sbjct: 139 IIVTPTSLVSNWEAEIKKWVGD 160


>At4g04790.1 68417.m00701 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 713

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 81  EMAGYFEEMGWRELGDGEQPNHL 149
           E  GY+E + W  LGDGE+   L
Sbjct: 216 ERLGYYEMLLWIHLGDGEKIEEL 238


>At5g46380.1 68418.m05708 hypothetical protein
          Length = 607

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -2

Query: 153 VRDDLVVPHHPILSNPFLQN-NQP 85
           V+DD ++P  P+  NPF  + N+P
Sbjct: 171 VKDDCLLPEKPVAPNPFSNSFNEP 194


>At4g33710.1 68417.m04787 pathogenesis-related protein, putative
           similar to PR-1a protein [Nicotiana tabacum] GI:19944;
           contains Pfam profile PF00188: SCP-like extracellular
           protein
          Length = 166

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 237 LSMQPEVSLATPLHQFDLSQNL*EILQNVRDDLVVPH 127
           L++   ++ A PL   D  Q+  ++  + RDD+ VPH
Sbjct: 13  LALALVLAFAVPLKAQDRRQDYLDVHNHARDDVSVPH 49


>At2g38150.1 68415.m04683 alpha 1,4-glycosyltransferase family
           protein / glycosyltransferase sugar-binding DXD
           motif-containing protein low similarity to
           alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
           [gi:5726306], Gb3 synthase, Rattus norvegicus
           [gi:9082162] ; contains Pfam profiles PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif
          Length = 736

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 176 IYEKSCK-M*EMIWLFPITQFSPTHFFKITSHFSS 75
           +Y K+C     MIWL P   F P     I + F++
Sbjct: 445 LYNKNCSAQFFMIWLSPANSFGPREMLAIDTLFTT 479


>At2g27700.1 68415.m03356 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to
           SP|P39730 Translation initiation factor IF-2
           {Saccharomyces cerevisiae}; contains Pfam profiles
           PF00009: Elongation factor Tu GTP binding domain,
           PF03144: Elongation factor Tu domain 2
          Length = 479

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 224 GCIERGSTKITDVVIGNPKEG 286
           G I+ G TK+ D + GN +EG
Sbjct: 43  GHIDTGKTKLLDYITGNVQEG 63


>At5g47250.1 68418.m05826 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = -2

Query: 237 LSMQPEVSLATPLHQFDLSQNL*EILQNVRDDLVVPHHPILSNPFLQNNQ 88
           LS  P+V+  T + +  L  N  EI +N+ DD   P    L   FLQNN+
Sbjct: 499 LSQLPDVTDWTTVTKMSLFNN--EI-KNIPDDPEFPDQTNLVTLFLQNNR 545


>At5g05630.1 68418.m00614 amino acid permease family protein weak
           similarity to y+LAT1a (amino acid transporter) [Mus
           musculus] GI:3970791; contains Pfam profile PF00324:
           Amino acid permease
          Length = 490

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +1

Query: 40  LIL*IIFVPHSILEKWLVILKKWVGENWVMGNNQI 144
           +++  + +P     +WLV+ KK  G NW +  N +
Sbjct: 207 VVMSFMSIPKLKPSRWLVVSKKMKGVNWSLYLNTL 241


>At1g61490.1 68414.m06928 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 804

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 179 WLRSNWCSGVAKLTSGCIERGSTKITDVVIGNP 277
           W R NW  G A+LT    +  ST   DV I +P
Sbjct: 316 WKRGNWTGGCARLTELHCQGNSTG-KDVNIFHP 347


>At1g05930.1 68414.m00622 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 318

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +1

Query: 79  EKWLVILKKWVGENWVM--GNNQII 147
           +KW VILK+W G+N+ +  G N ++
Sbjct: 240 QKWSVILKRW-GQNYFLSCGWNDVV 263


>At1g56570.1 68414.m06506 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 611

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 100 KKWVGENWVMGNNQIISYILQD 165
           KK  G +W++  NQ+ S+ + D
Sbjct: 550 KKEAGMSWILVENQVFSFAVSD 571


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,656,525
Number of Sequences: 28952
Number of extensions: 156094
Number of successful extensions: 471
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 291273680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)