Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30139X
         (492 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   2.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   2.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   3.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   3.5  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   3.5  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   3.5  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   3.5  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   3.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   4.6  

>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 317 QHHPIRHKQSHQAGREEEGA 376
           QHH   H+Q H     ++GA
Sbjct: 177 QHHQPHHQQQHMMYGGQQGA 196


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 317 QHHPIRHKQSHQAGREEEGA 376
           QHH   H+Q H     ++GA
Sbjct: 179 QHHQPHHQQQHMMYGGQQGA 198


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 99  YPHP--APEG*TSASSESAPSDQPIYPDTG 182
           YP+P  +PE    A+S   PS  P+ P  G
Sbjct: 172 YPYPILSPEMSQVAASWHTPSMYPLSPGAG 201


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = +3

Query: 99  YPHP--APEG*TSASSESAPSDQPIYPDTG 182
           YP+P  +PE    A+S   PS  P+ P  G
Sbjct: 64  YPYPILSPEMSQVAASWHTPSMYPLSPGAG 93


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 51  ALTNGKVLWPLLEER 7
           A   G V+WP++E+R
Sbjct: 236 AQATGFVVWPIIEQR 250


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 51  ALTNGKVLWPLLEER 7
           A   G V+WP++E+R
Sbjct: 236 AQATGFVVWPIIEQR 250


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 51  ALTNGKVLWPLLEER 7
           A   G V+WP++E+R
Sbjct: 236 AQATGFVVWPIIEQR 250


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 51  ALTNGKVLWPLLEER 7
           A   G V+WP++E+R
Sbjct: 236 AQATGFVVWPIIEQR 250


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 132  ASSESAPSDQPIYPD 176
            ASS  APS  P+ PD
Sbjct: 2288 ASSTMAPSTTPMVPD 2302


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,229
Number of Sequences: 336
Number of extensions: 2263
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11525470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)