Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30139X
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   116   1e-27
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    39   5e-04
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    38   6e-04
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   3.5  
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo...    25   6.2  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  116 bits (280), Expect = 1e-27
 Identities = 53/80 (66%), Positives = 63/80 (78%)
 Frame = +1

Query: 4   NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAELQRRLKVPPPINQFTQTLD 183
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++  L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 184 KTTAKGLFKILEKYRPETEA 243
           K TA  +FK+L KYRPET A
Sbjct: 84  KNTATQVFKLLNKYRPETAA 103



 Score = 61.3 bits (142), Expect = 8e-11
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +2

Query: 365 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 478
           ++  LV+IA DVDPIELV+FLPALC+KMGVPY IVK +
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNK 183



 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 312 RPNTIRSGTNKVTKLVEKKKAHL 380
           +P  ++ G N V  L+E KKA L
Sbjct: 128 KPYNVKYGLNHVVALIEAKKAKL 150


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 18/49 (36%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +2

Query: 317 QHHPIRH-KQSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPY 460
           Q H +R  K+  +A R+ E  LV++A D+ P++++  +P LC    VPY
Sbjct: 51  QKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPY 99


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 38.3 bits (85), Expect = 6e-04
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 308 KEAQHHPIRHKQSHQAGREEEGAL---VVIAHDVDPIELVLFLPALCRKMGVPYCIV 469
           ++A H+    K +++A +     +   +V+A D +PIE++L LP LC    VPY  V
Sbjct: 24  QQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFV 80


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 345  LCLCRIGWC 319
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPAC1851.03 |ckb1||CK2 family regulatory subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/13 (69%), Positives = 13/13 (100%)
 Frame = +1

Query: 190 TAKGLFKILEKYR 228
           TA+GL+K+LEKY+
Sbjct: 94  TAQGLYKMLEKYK 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,341
Number of Sequences: 5004
Number of extensions: 36259
Number of successful extensions: 127
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)