Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30139X
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 118 3e-27
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 118 3e-27
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 101 2e-22
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 33 0.094
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 33 0.12
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 33 0.12
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 33 0.12
05_01_0580 + 5210002-5210170,5210466-5210524,5210883-5211668,521... 31 0.38
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 30 0.88
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 29 1.5
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 29 2.0
02_01_0237 - 1570395-1571225,1572225-1572245,1572336-1572506,157... 29 2.0
02_02_0061 + 6468190-6471046,6471318-6471736 28 4.7
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314 27 6.2
04_04_1159 - 31352922-31353098,31354117-31354267,31354581-313548... 27 6.2
11_04_0354 + 16697571-16700256,16700335-16700759 27 8.2
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 27 8.2
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 118 bits (284), Expect = 3e-27
Identities = 53/81 (65%), Positives = 64/81 (79%)
Frame = +1
Query: 4 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAELQRRLKVPPPINQFTQTLD 183
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ L++RLKVPP +NQFT+TLD
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 184 KTTAKGLFKILEKYRPETEAA 246
K A LFK+L KYRPE +AA
Sbjct: 82 KNLATNLFKMLLKYRPEDKAA 102
Score = 68.5 bits (160), Expect = 3e-12
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +2
Query: 362 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 478
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKG+
Sbjct: 141 QSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 179
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 118 bits (284), Expect = 3e-27
Identities = 53/81 (65%), Positives = 64/81 (79%)
Frame = +1
Query: 4 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAELQRRLKVPPPINQFTQTLD 183
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ L++RLKVPP +NQFT+TLD
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 184 KTTAKGLFKILEKYRPETEAA 246
K A LFK+L KYRPE +AA
Sbjct: 66 KNLATNLFKMLLKYRPEDKAA 86
Score = 50.8 bits (116), Expect = 6e-07
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = +2
Query: 362 EEEGALVVIAHDVDPIELVLFLPALCRKMGV 454
+ + LVVIAHDVDPIELV++LPALCRKM +
Sbjct: 125 QSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 101 bits (243), Expect = 2e-22
Identities = 46/80 (57%), Positives = 59/80 (73%)
Frame = +1
Query: 1 VNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAELQRRLKVPPPINQFTQTL 180
VNPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ L++RLKVPP +NQFT+TL
Sbjct: 22 VNPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTL 81
Query: 181 DKTTAKGLFKILEKYRPETE 240
DK ++L++ + E E
Sbjct: 82 DKNLGCQKERLLKRAQAEAE 101
Score = 68.1 bits (159), Expect = 4e-12
Identities = 29/39 (74%), Positives = 35/39 (89%)
Frame = +2
Query: 362 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 478
+ + LVVIAHDVDPIELV++LPALCRKM +PYCIVKG+
Sbjct: 126 QSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGK 164
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 33.5 bits (73), Expect = 0.094
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 359 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIV 469
R + L +IA ++ PI+++ +P LC + +PY V
Sbjct: 57 RRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYV 93
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 380 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 469
VV+A D +P+E++L LP L VPY V
Sbjct: 52 VVMAADAEPLEILLHLPLLAEDKNVPYVFV 81
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 33.1 bits (72), Expect = 0.12
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 380 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 469
VV+A D +P+E++L LP L VPY V
Sbjct: 54 VVMAADTEPLEILLHLPLLAEDKNVPYVFV 83
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 33.1 bits (72), Expect = 0.12
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 359 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIV 469
R L VIA ++ PI+++ +P LC + +PY V
Sbjct: 57 RRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYV 93
>05_01_0580 +
5210002-5210170,5210466-5210524,5210883-5211668,
5211898-5212737
Length = 617
Score = 31.5 bits (68), Expect = 0.38
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 324 IRSGTNKVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYAVK 446
+R +K+ K VE+ K +S + L+ L W ++C RY ++
Sbjct: 348 LRQENDKLAKEVEQLKTDRFSDVEELVYLKWINACLRYELR 388
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 30.3 bits (65), Expect = 0.88
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 318 NTIRSGTNKVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYAVK 446
N +R +TK VE + + +S + L+ L W ++C RY ++
Sbjct: 289 NKLRHANEDLTKQVEGLQMNRFSEVEELVYLRWVNACLRYELR 331
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 102 PHPAPEG*TSASSESAPSDQP 164
P PAPE +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 318 NTIRSGTNKVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYAVK 446
N +R +TK VE + + +S + L+ L W ++C RY ++
Sbjct: 594 NKLRHVNEDLTKQVEGLQMNRFSEVEELVYLRWVNACLRYELR 636
>02_01_0237 -
1570395-1571225,1572225-1572245,1572336-1572506,
1572942-1573070,1574364-1574657
Length = 481
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -2
Query: 485 RELAP*QCSMVRPFYGITLAGREPAQWDQHHER*PQVRLLLLDQLGDFVCAGS--DGVGP 312
R + P + M+ G +A EP++WD P++ LL G + G DG G
Sbjct: 129 RFIGPCKNRMIIQIQGTIVAPDEPSEWDPAS---PRLWLLFSGLAGARIQGGGLIDGSGS 185
Query: 311 LWW 303
WW
Sbjct: 186 KWW 188
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = -1
Query: 123 SLLALDADILGPSYKSGQVPSWLNALTNGKVLWPLLEE 10
SL L A +LG + +G +PS++ +L N K L +LEE
Sbjct: 111 SLQNLQALVLGENRLTGSIPSFIGSLANLKFL--ILEE 146
>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
Length = 1056
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 123 SLLALDADILGPSYKSGQVPSWLNALT 43
+L AL + +Y GQ+PSWL LT
Sbjct: 179 NLTALTMFSIADNYVHGQIPSWLGNLT 205
>04_04_1159 -
31352922-31353098,31354117-31354267,31354581-31354812,
31354902-31355112,31355791-31355909,31355994-31356176,
31356283-31356481,31356636-31357015,31357127-31357191,
31357925-31357990,31358427-31358501,31358781-31358852,
31359318-31359386,31359476-31359547,31359658-31359729,
31360126-31360230,31360282-31360353,31361053-31361230,
31361707-31361791
Length = 860
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 123 SLLALDADILGPSYKSGQVPSWLNALTNGKVLW 25
SL L+ + + SG++PS L+ LT K+LW
Sbjct: 164 SLFKLEELFIDSAGLSGELPSSLSKLTRMKILW 196
>11_04_0354 + 16697571-16700256,16700335-16700759
Length = 1036
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = -1
Query: 150 GHFQTTLKFSLLALDADILGPSYKSGQVPSWLNALTNGKVLW 25
G + LK + +L L +Y +G++P+WL AL + K+++
Sbjct: 111 GDITSDLK-NCTSLQGISLKSNYLTGEIPAWLGALPSLKLIY 151
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 284 CQER*ASTKEAQHHPIRHKQSHQAGREEEGALVVIAHDVDPIEL 415
C+ AS+K + HP K+S E LV I ++ DP+ L
Sbjct: 812 CRAAVASSKWRRRHPSTTKESAGVEPAEPPVLVRIKNERDPVRL 855
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,160,278
Number of Sequences: 37544
Number of extensions: 278479
Number of successful extensions: 958
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -