Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30139X
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)             126   1e-29
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        67   6e-12
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          41   5e-04
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        38   0.006
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score =  126 bits (304), Expect = 1e-29
 Identities = 56/81 (69%), Positives = 67/81 (82%)
 Frame = +1

Query: 1   VNPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAELQRRLKVPPPINQFTQTL 180
           VNPL EKRP+NF IG  IQP RDLSRFVRWP+Y+++QRQK+ L +RLKVPP INQFTQ L
Sbjct: 28  VNPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQAL 87

Query: 181 DKTTAKGLFKILEKYRPETEA 243
           D+ +   LFK+L KYRPET+A
Sbjct: 88  DRQSTVQLFKLLHKYRPETKA 108



 Score = 67.3 bits (157), Expect = 6e-12
 Identities = 29/38 (76%), Positives = 35/38 (92%)
 Frame = +2

Query: 365 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 478
           ++  LVVIAHDVDPIE+V++LPALCRKM VPYCIVKG+
Sbjct: 150 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGK 187



 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 312 RPNTIRSGTNKVTKLVEKKKAHL 380
           +P  ++ G N +T LVE KKA L
Sbjct: 132 KPMLVKYGINHITSLVENKKAQL 154


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 67.3 bits (157), Expect = 6e-12
 Identities = 29/38 (76%), Positives = 35/38 (92%)
 Frame = +2

Query: 365 EEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 478
           ++  LVVIAHDVDPIE+V++LPALCRKM VPYCIVKG+
Sbjct: 59  KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGK 96



 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 202 LFKILEKYRPETEA 243
           LFK+L KYRPET+A
Sbjct: 4   LFKLLHKYRPETKA 17



 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 312 RPNTIRSGTNKVTKLVEKKKAHL 380
           +P  ++ G N +T LVE KKA L
Sbjct: 41  KPMLVKYGINHITSLVENKKAQL 63


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +2

Query: 338 KQSHQAGREEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQVP 484
           K+  +A R+ E   V++A DV PI+++  +P +C    +PY  V  +VP
Sbjct: 104 KEVVKALRKGEKGFVILAGDVSPIDVISHIPVMCEDSKIPYAYVPSKVP 152


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = +2

Query: 380 VVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 478
           +V+A D +P+E++L LP LC    VPY  V+ +
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSK 145


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 126 TSASSESAPSDQPIYPDTG 182
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,428,785
Number of Sequences: 59808
Number of extensions: 290890
Number of successful extensions: 880
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)