Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30139X
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...   119   1e-27
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...   119   1e-27
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...   118   2e-27
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    98   3e-21
Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical pr...    38   0.003
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    31   0.45 
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81046-5|CAB02823.1|  225|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score =  119 bits (287), Expect = 1e-27
 Identities = 53/81 (65%), Positives = 65/81 (80%)
 Frame = +1

Query: 4   NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAELQRRLKVPPPINQFTQTLD 183
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192

Query: 184 KTTAKGLFKILEKYRPETEAA 246
             +A+  FK+L+KYRPE+  A
Sbjct: 193 SHSARQAFKLLDKYRPESSEA 213


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score =  119 bits (287), Expect = 1e-27
 Identities = 55/81 (67%), Positives = 66/81 (81%), Gaps = 1/81 (1%)
 Frame = +1

Query: 4   NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAELQRRLKVPPPINQFTQTLD 183
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 184 KTTAKGLFKILEKYRPE-TEA 243
             +A+  FK+L+KYRPE TEA
Sbjct: 90  SQSARQAFKLLDKYRPESTEA 110



 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 24/34 (70%), Positives = 30/34 (88%)
 Frame = +2

Query: 377 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 478
           LV+IAHDV+P+E+VL LPALCRK  VPY I+KG+
Sbjct: 155 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGK 188



 Score = 34.3 bits (75), Expect = 0.049
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +3

Query: 312 RPNTIRSGTNKVTKLVEKKKAHL 380
           RPNT+R G N +T+LVE ++A L
Sbjct: 133 RPNTVRHGVNTITRLVETRRAQL 155


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score =  118 bits (285), Expect = 2e-27
 Identities = 52/78 (66%), Positives = 64/78 (82%)
 Frame = +1

Query: 4   NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAELQRRLKVPPPINQFTQTLD 183
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A LQ+RLKVPP INQF   LD
Sbjct: 30  NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89

Query: 184 KTTAKGLFKILEKYRPET 237
             +A+  FK+L+KYRPE+
Sbjct: 90  SQSARQAFKLLDKYRPES 107



 Score = 57.6 bits (133), Expect = 5e-09
 Identities = 24/34 (70%), Positives = 30/34 (88%)
 Frame = +2

Query: 377 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 478
           LV+IAHDV+P+E+VL LPALCRK  VPY I+KG+
Sbjct: 135 LVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGK 168



 Score = 34.3 bits (75), Expect = 0.049
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = +3

Query: 312 RPNTIRSGTNKVTKLVEKKKAHL 380
           RPNT+R G N +T+LVE ++A L
Sbjct: 113 RPNTVRHGVNTITRLVETRRAQL 135


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 43/60 (71%), Positives = 50/60 (83%)
 Frame = +1

Query: 4   NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAELQRRLKVPPPINQFTQTLD 183
           NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A LQ+RLKVPP INQF   LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192


>Z49911-4|CAA90127.1|  128|Caenorhabditis elegans Hypothetical
           protein M28.5 protein.
          Length = 128

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 377 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 478
           ++V+A D +P+E++L LP LC    VPY  V+ +
Sbjct: 53  IIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSK 86


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 31.1 bits (67), Expect = 0.45
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 359 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIV 469
           R  E  + ++A +V PI++   +P +C +  +PY  +
Sbjct: 81  RRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYI 117


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +2

Query: 152 LRSTNLPRHWTRLQLRA 202
           +RSTNL  +WT LQLRA
Sbjct: 65  VRSTNLDTNWTWLQLRA 81


>Z81046-5|CAB02823.1|  225|Caenorhabditis elegans Hypothetical
           protein C37E2.2a protein.
          Length = 225

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/45 (26%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 132 LKFSLLALDADILGPSYKSGQVPSWLNALTNG-KVLWPLLEERIH 1
           L + L A++  ++ P + +  +PSWLN +T+   +++ +L+   H
Sbjct: 88  LFWGLYAINPALVMPDWIAKLIPSWLNHITHTYPIIFIILDSYFH 132


>Z81046-2|CAB02824.1|  295|Caenorhabditis elegans Hypothetical
           protein C37E2.3 protein.
          Length = 295

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = -1

Query: 108 DADILGPSYKSGQVPSWLNALTNG-KVLWPLLEERIH 1
           D+D++ P++ +  VPSWLN + +   +++ LL+   H
Sbjct: 175 DSDLVMPAWVAEIVPSWLNHINHTYLIVFILLDSYYH 211


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,269,936
Number of Sequences: 27780
Number of extensions: 213679
Number of successful extensions: 651
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)