Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30139X
(492 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 119 1e-27
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 118 2e-27
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 38 0.004
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 0.10
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 0.10
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 0.10
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 33 0.14
At1g52080.1 68414.m05875 actin binding protein family contains P... 30 0.97
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 29 2.2
At5g07010.1 68418.m00794 sulfotransferase family protein similar... 28 3.0
At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family... 27 6.9
At1g70500.1 68414.m08113 polygalacturonase, putative / pectinase... 27 9.1
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 119 bits (286), Expect = 1e-27
Identities = 53/81 (65%), Positives = 65/81 (80%)
Frame = +1
Query: 4 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAELQRRLKVPPPINQFTQTLD 183
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK L++RLKVPP +NQFT+TLD
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 79
Query: 184 KTTAKGLFKILEKYRPETEAA 246
K A LFKIL KYRPE +AA
Sbjct: 80 KNLATSLFKILLKYRPEDKAA 100
Score = 68.5 bits (160), Expect = 2e-12
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +2
Query: 362 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 478
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKG+
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 177
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 118 bits (285), Expect = 2e-27
Identities = 52/81 (64%), Positives = 65/81 (80%)
Frame = +1
Query: 4 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAELQRRLKVPPPINQFTQTLD 183
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK L++RLKVPP +NQFT+TLD
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80
Query: 184 KTTAKGLFKILEKYRPETEAA 246
K A LFK+L KYRPE +AA
Sbjct: 81 KNLATSLFKVLLKYRPEDKAA 101
Score = 68.5 bits (160), Expect = 2e-12
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +2
Query: 362 EEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGQ 478
+ + LVVIAHDVDPIELV++LPALCRKM VPYCIVKG+
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGK 178
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 37.9 bits (84), Expect = 0.004
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 359 REEEGALVVIAHDVDPIELVLFLPALCRKMGVPYCIV 469
R + L VIA ++ PI+++ LP LC + GVPY V
Sbjct: 63 RRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYV 99
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 33.1 bits (72), Expect = 0.10
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 380 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 469
VV+A D +P+E++L LP L VPY V
Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFV 115
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 33.1 bits (72), Expect = 0.10
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 380 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 469
VV+A D +P+E++L LP L VPY V
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFV 83
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 33.1 bits (72), Expect = 0.10
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 380 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 469
VV+A D +P+E++L LP L VPY V
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFV 83
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 32.7 bits (71), Expect = 0.14
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 380 VVIAHDVDPIELVLFLPALCRKMGVPYCIV 469
+V+A D +P+E++L LP L VPY V
Sbjct: 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFV 83
>At1g52080.1 68414.m05875 actin binding protein family contains
Prosite PS00019: Actinin-type actin-binding domain
signature 1; similar to actin binding protein
(GI:28071265) [Arabidopsis thaliana]; similar to A-type
inclusion protein (ATI) (Swiss-Prot:P16602) [Cowpox
virus]
Length = 573
Score = 29.9 bits (64), Expect = 0.97
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 318 NTIRSGTNKVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYAVK 446
N +RS ++ K VE+ + + L L+ L W ++C RY ++
Sbjct: 329 NRLRSENEELKKDVEQLQGDRCTDLEQLVYLRWINACLRYELR 371
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 6 SSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEG 122
S+L + + LC H ++G V+ K + +Y H PEG
Sbjct: 451 SNLLLDGRLLCEEEHHFDDTGSVETFKSSGIYEHVIPEG 489
>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 359
Score = 28.3 bits (60), Expect = 3.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 368 LLLDQLGDFVCAGSDGVGPLWWRLI 294
+LLDQ D C G G GP W ++
Sbjct: 214 VLLDQAFDLYCRGVIGFGPFWEHML 238
>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
protein Common family members: At4g18570, At4g04980,
At5g61090 [Arabidopsis thaliana]; identical to cDNA
CHUP1 for actin binding protein GI:28071264
Length = 1004
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +3
Query: 318 NTIRSGTNKVTKLVEKKKAHLWSSLMMLIPLSWFSSCQRYAVK 446
N ++ + K VE + + +S + L+ L W ++C RY ++
Sbjct: 321 NNLKHNNEDLLKQVEGLQMNRFSEVEELVYLRWVNACLRYELR 363
>At1g70500.1 68414.m08113 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase [Cucumis sativus]
GI:6624205; contains Pfam profile PF00295: Glycosyl
hydrolases family 28 (polygalacturonases)
Length = 468
Score = 26.6 bits (56), Expect = 9.1
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = -2
Query: 473 P*QCSMVRPFYGITLAGREPAQWDQHHER*PQVRLLLLDQLGDFVCAGS---DGVGPLWW 303
P Q ++ G +A EP+QWD R L +L V G+ DG G WW
Sbjct: 119 PCQEKLIIQIDGTIIAPDEPSQWDPKFPR----NWLQFSKLQGVVFQGNGVIDGSGTKWW 174
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,895,196
Number of Sequences: 28952
Number of extensions: 207323
Number of successful extensions: 668
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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