Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30137X
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    29   0.36 
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   2.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   3.4  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    25   5.9  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    25   7.8  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    25   7.8  

>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -2

Query: 435 HNPVLRLHYLNLSREFRSLARGGGDL--RNRFTLSMVSSLVSEVRN 304
           HNP   L  L +SRE  SL     D   + R TL  +S+LVS  +N
Sbjct: 255 HNPSTLLSILPISRELNSLLNRIFDRNPKTRITLPELSTLVSNCKN 300


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 484 SIKLITSNKRMWWIFATQSC 425
           S+  +T+N  +WW++A   C
Sbjct: 390 SLTTVTTNTNIWWVWAESRC 409


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -1

Query: 262  HAHNNNVRLVV---VVESLLQLTSFATHDAVGSLEIVVVSSIGAGVEFRPNDLRVVL 101
            H   +N+ LVV   +  S  Q+TS     ++ SLE  ++  +GA    R +D +V L
Sbjct: 952  HKLGSNIALVVDELINLSSKQITSHPQSLSIASLEASLIFVLGASSIIREDDSKVTL 1008


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 23/101 (22%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
 Frame = +2

Query: 95  PTEDYPKIVRSEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVVCVEATV 274
           P ED P +  S+    P  A     ++S+ + +     ++  L  + +    +   E + 
Sbjct: 612 PFEDAPALDESDLSGDPFWAIQPK-QSSSQVPKENHHNIQSKLSINTEAATDLKANELSS 670

Query: 275 TRTLTANLKPLRT-SLTRLDTMLRVNLFLRSPPPRAKLLNS 394
            +T        R+ SL+ L   LR +  +R  PP +K++NS
Sbjct: 671 PKTPEYCRGDDRSISLSPLSYRLRKSKHIRESPPSSKVINS 711


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -2

Query: 525 QQIVKKTYKKIWQ*ASN**RVTRECGGSSPHNPVLRLHYLNLSREFRS 382
           Q++    Y  +W   ++   V+ +  GS PH+P   L   NL +  +S
Sbjct: 172 QRLDSLLYYPVWVRRTDPVGVSNDVMGSVPHHPYFELIIQNLEKNAKS 219


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/59 (22%), Positives = 29/59 (49%)
 Frame = +2

Query: 125 SEFDASPDGAYNYNFETSNGIVRSETGELKEALDDDNKPHVIVVCVEATVTRTLTANLK 301
           +EF+ SP+  Y  + +    I+ + T EL  A ++D +  +++ C    + +     +K
Sbjct: 228 TEFNISPELCYTDSGKRFLPIISNVTAELYPADEEDIRRQLLLQCFRPVLFKNCLKTVK 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,226,866
Number of Sequences: 5004
Number of extensions: 42498
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)