Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30137X
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0311 - 2753062-2753232,2753340-2753381,2754490-2754667,275...    29   3.4  
05_04_0107 - 18039942-18040123,18040228-18040474                       28   4.6  
09_02_0454 + 9514706-9515776                                           28   6.0  

>08_01_0311 -
           2753062-2753232,2753340-2753381,2754490-2754667,
           2755021-2755118,2755964-2756098,2756280-2756444,
           2756529-2756693,2757082-2757299,2758508-2758811
          Length = 491

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/54 (33%), Positives = 30/54 (55%)
 Frame = +2

Query: 236 KPHVIVVCVEATVTRTLTANLKPLRTSLTRLDTMLRVNLFLRSPPPRAKLLNSL 397
           KPH I+V  E  +  T+    K +  +  R D +++V L  R  PP AKL++++
Sbjct: 155 KPHHILV--EKPLCTTVQDCQKVVEAAKQRSDILVQVGLEYRYMPPVAKLIDTV 206


>05_04_0107 - 18039942-18040123,18040228-18040474
          Length = 142

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -1

Query: 283 CSCNCSFHAHNNNVRLVVVV 224
           C C C  H H    +LVVVV
Sbjct: 10  CCCRCQLHLHRGGEQLVVVV 29


>09_02_0454 + 9514706-9515776
          Length = 356

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -1

Query: 187 DAVGSLEIVVVSSIGAGVEFRPNDLRVVLCRGGS 86
           D VGS  +V V      V     D R VLCRGG+
Sbjct: 187 DHVGSTAVVAVVEESRVVVANCGDSRAVLCRGGA 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,177,039
Number of Sequences: 37544
Number of extensions: 314239
Number of successful extensions: 875
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)